TABLE 2.
Species identifications of Corynebacterium diphtheriae species complex bacteria samples by MALDI-TOF MS using the commercial Bruker database MBTKc,d
| Species/parameter of interest | No. of samples | Score mean | Score STD | No. of samples identified | Identification rate (%) | No. of true positive | No. of false negative | True positive rate (%) of identified samples | False negative rate (%) of identified samples | No. of. samples of the control group | No. of samples identified | Identification rate (%) | No. of true negative | No. of false positive | True negative rate (%) of identified samples | False positive rate (%) of identified samples | Criteria of the BVL guideline fulfilled |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C. diphtheriae s.l. | |||||||||||||||||
| C. belfantii | 7 | 2.19 | 0.09 | 7 | 100 | 0 | 7a | 0 | 100a | 1,602 | 803 | 50.1 | 803 | 0 | 100 | 0 | No |
| C. diphtheriae s.s. | 31 | 2.41 | 0.11 | 31 | 100 | 31 | 0 | 100 | 0 | 1,578 | 786 | 49.8 | 772 | 14a | 98.2 | 1.8a | No |
| C. rouxii | 8 | 2.12 | 0.11 | 7 | 87.5 | 0 | 7a | 0 | 100a | 1,601 | 803 | 50.2 | 803 | 0 | 100 | 0 | No |
| C. diphtheriae s.s., C. belfantii, C. rouxii interpreted as C. diphtheriae s.l. | 46 | 2.33 | 0.16 | 45 | 97.8 | 45 | 0 | 100 | 0 | 1,563 | 772 | 49.4 | 772 | 0 | 100 | 0 | Yesa |
| C. pseudotuberculosis | 80 | 2.36 | 0.17 | 80 | 100 | 80 | 0 | 100 | 0 | 1,529 | 723 | 47.3 | 723 | 0 | 100 | 0 | Yes |
| C. ulcerans s.l. | |||||||||||||||||
| C. silvaticum | 88 | 2.10 | 0.10 | 78 | 88.6 | 0 | 78b | 0 | 78b | 1,521 | 803 | 52.8 | 803 | 0 | 100 | 0 | No |
| C. ramonii | 9 | 2.37 | 0.09 | 9 | 100 | 0 | 9 | 0 | 100b | 1,600 | 803 | 50.2 | 803 | 0 | 100 | 0 | No |
| C. ulcerans s.s. | 105 | 2.37 | 0.10 | 105 | 100 | 105 | 0 | 200 | 0 | 1,504 | 785 | 52.2 | 698 | 87a | 88.9 | 11.1b | No |
| C. ulcerans. s., C. ramonii, C. silvaticum interpreted as C. ulcerans s.l. | 202 | 2.25 | 0.17 | 202 | 100 | 202 | 0 | 100 | 0 | 1,485 | 698 | 46.7 | 698 | 0 | 100 | 0 | Yesb |
C. belfantii and C. rouxii are not represented in the database used.
C. ramonii and C. silvaticum are not represented in the database used. s.l.: sensu lato; s.s.: sensu stricto, No.: number; Score STD: standard deviation of the score.
True/False: the species was correctly/not correctly identified. All samples within the control group did not belong to the parameter of interest. Individual results for every sample are given in Tables S3a through i.
Italics indicate calulated values, like %, mean STD, against the counted numbers (roman).