Table 3.
Dataset | Platform and number of measurements | Biological relevance (functional bias scorea) | Sequence similarity bias scorea | Bias scores ratio | Number of selected genes |
---|---|---|---|---|---|
Gasch | cDNA, 53 | 0.24 | 0.08 | 3.0 | 1000 |
Gasch | cDNA, 53 | 0.21 | 0.07 | 3.0 | 2000 |
Gasch | cDNA, 53 | 0.18 | 0.07 | 2.6 | 3000 |
Gasch | cDNA, 53 | 0.19 | 0.08 | 2.4 | 4000 |
Spellman | cDNA, 148 | 0.16 | 0.07 | 2.3 | 1000 |
Spellman | cDNA, 148 | 0.20 | 0.09 | 2.2 | 2000 |
Spellman | cDNA, 148 | 0.18 | 0.08 | 2.3 | 3000 |
Spellman | cDNA, 148 | 0.17 | 0.08 | 2.1 | 4000 |
Causton | Affy, 45 | 0.35 | 0.06 | 6.0 | 1000 |
Causton | Affy, 45 | 0.43 | 0.06 | 7.1 | 2000 |
Causton | Affy, 45 | 0.52 | 0.07 | 7.5 | 3000 |
Causton | Affy, 45 | 0.50 | 0.06 | 8.3 | 4000 |
aThe bias score is a proportion of genes in the network with significantly (P < 0.01) biased associations.