TABLE 1.
Step | PCR program
|
Primers (amt [pmol]) | |
---|---|---|---|
Temp (°C), duration | No. of cycles | ||
RT-PCRa (template amplification) | 55, 30 min | 1 | MSRT1 (12), MSRT2 (12) |
95, 2 min | 1 | ||
94, 30 s; 58, 30 s; 72, 30 s | 7 | ||
Second PCRb (detection) | 94, 30 s; 58, 30 s; 72, 30 s | 20 | 41 MS-PCR: MSRT1 (3), MS41W (2), MS41M (3) |
70MS-PCR: MSRT1 (5), MS70W (2), MS70M (4) | |||
Third PCRb (detection) | 94, 30 s; 58, 30 s; 72, 30 s | 40 | 41MS-PCR: MSRT3 (10), MS41W (8), MS41M (20) |
70MS-PCR: MSRT3 (10), MS70W (8), MS70M (20) |
RT-PCR: 5 mM MgCl2, 1 mM deoxynucleoside triphosphates, 1 × One-Step PCR buffer (Takara).
Second and third PCRs 1mM MgCl2, 0.08 mM deoxynucleoside triphosphates, 1 × PCR buffer (Promega).