AMR	Antimicrobial resistance
ARGs	Antimicrobial resistance genes
cgSNP	Core-genome single-nucleotide polymorphism
CLSI	Clinical and Laboratory Standards Institute
ECDC	European Centre for Disease Prevention and Control
EFSA	European Food Safety Authority
ESBL	Extended-spectrum β-lactamase
ExPEC	Extraintestinal pathogenic Escherichia coli
MAR	Multiple antimicrobial resistance
MDR	Multidrug-resistant
MIC	Minimum inhibitory concentration
MLST	Multilocus sequence typing
PMQR	Plasmid-mediated quinolone resistance
QRDR	Quinolone resistance-determining region
SNP	Single-nucleotide polymorphism
ST	Sequence type
WGS	Whole-genome sequencing
WHO	World Health Organization