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. 2026 Jun 16;16(12):1855. doi: 10.3390/ani16121855
GWAS Genome-Wide Association Study
LD Linkage Disequilibrium
SNP Single-Nucleotide Polymorphism
WGS Whole-Genome Sequencing
QC Quality Control
MAF Minor Allele Frequency
HWE Hardy–Weinberg Equilibrium
PCA Principal Component Analysis
PC Principal Component
VCF Variant Call Format
DR2 Imputation Accuracy Metric (Dosage R-squared)
GRM Genomic Relationship Matrix
GBLUP Genomic Best Linear Unbiased Prediction
PIP Posterior Inclusion Probability
SuSiE-RSS Sum of Single Effects model using Regression with Summary Statistics
R2 Coefficient of Determination
PCC Pearson Correlation Coefficient
MSE Mean Squared Error
AUC Area Under the Curve
GO Gene Ontology
KEGG Kyoto Encyclopedia of Genes and Genomes
FDR False Discovery Rate
BH Benjamini–Hochberg procedure