| BH | Benjamini–Hochberg |
| CHIKV | Chikungunya virus |
| COVID-19 | Coronavirus disease 2019 |
| CV | Cross-validation |
| DENV | Dengue virus |
| DE | Differential expression |
| FDR | False discovery rate |
| GLM | Generalized linear model |
| GLMQL-MAS | Generalized Linear Models with Quasi-Likelihood F-tests and Magnitude–Altitude Scoring |
| GO BP | Gene Ontology Biological Process |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| log2FC | Log2 fold change |
| MAS | Magnitude–Altitude Scoring |
| OTE | Organ tissue equivalent |
| PBMC | Peripheral blood mononuclear cell |
| PC | Principal component |
| PCA | Principal component analysis |
| QL | Quasi-likelihood |
| RNA-seq | RNA sequencing |
| RT-PCR | Reverse transcription polymerase chain reaction |
| TMM | Trimmed mean of M values |
| WHO | World Health Organization |