CELLECT	Cell-type Expression-specific Integration for Complex Traits
CLPP	Colocalization posterior probability
COJO	Conditional and joint analysis
ECLIPSER	Enrichment of Cell-type-specific Loci Identified by Phenotypic SNP Enrichment with Regulatory annotations
eQTL	Expression quantitative trait locus
FUMA	Functional Mapping and Annotation
GCTA	Genome-wide Complex Trait Analysis
GEO	Gene Expression Omnibus
GO	Gene Ontology
gsMap	Genetically informed spatial mapping of cells for complex traits
GTEx	Genotype-Tissue Expression (project)
GWAS	Genome-wide association study
hdWGCNA	High-dimensional weighted gene co-expression network analysis
HLA	Human leukocyte antigen
JAK	Janus kinase
KEGG	Kyoto Encyclopedia of Genes and Genomes
LD	Linkage disequilibrium
MAF	Minor allele frequency
MAGMA	Multi-marker Analysis of GenoMic Annotation
MGI	Mouse Genome Informatics
MHC	Major histocompatibility complex
MLP	Multi-layer perceptron
MSigDB	Molecular Signatures Database
NK cell	Natural killer cell
PBMC	Peripheral blood mononuclear cell
PCA	Principal component analysis
PSC	Primary sclerosing cholangitis
QC	Quality control
RCP	Regional colocalization probability
scATAC-seq	Single-cell assay for transposase-accessible chromatin sequencing
scRNA-seq	Single-cell RNA sequencing
sc-ST	Single-cell spatial transcriptomics
S-LDSC	Stratified linkage disequilibrium score regression
SNP	Single nucleotide polymorphism
sQTL	Splicing quantitative trait locus
STAT3	Signal transducer and activator of transcription 3
Th17	T helper 17 (cell)
TNF-α	Tumor necrosis factor-alpha
TOM	Topological overlap matrix
Treg	Regulatory T cell
TSS	Transcription start site
TWAS	Transcriptome-wide association study
UC	Ulcerative colitis
UMAP	Uniform Manifold Approximation and Projection
UMI	Unique molecular identifier