TABLE 1.
Primers and amplicon sizes for loci included in the PCR assay
Locus | Primer designation | Nucleotide sequence of primer | Amplicon size(s) (bp) |
---|---|---|---|
bfpA | bfpA-F11 | 5′-GTCTGCGTCTGATTCCAATA-3′ | 408, 414 |
bfpA-R1 | 5′-TCAGCAGGAGTAATAGC-3′ | ||
toxB | toxB.911F | 5′-ATACCTACCTGCTCTGGATTGA-3′ | 602 |
toxB.1468R | 5′-TTCTTACCTGATCTGATGCAGC-3′ | ||
stx1 | 1A.251F | 5′-GGGATAGATCCAGAGGAAGG-3′ | 624 |
1A.832R | 5′-CCGGACACATAGAAGGAAACTC-3′ | ||
stx2 | 2A.506F | 5′-CTGGCGTTAATGGAGTTCAG-3′ | 383 |
2A.848R | 5′-CCTGTCGCCAGTTATCTGAC-3′ | ||
eae | eae-F1 | 5′-ACTCCGATTCCTCTGGTGAC-3′ | 389 |
eae-R3 | 5′-TCTTGTGCGCTTTGGCTT-3′ | ||
terC | terC.106F | 5′-TATGCACCGTGATGACAAGC-3′ | 210 |
terC.275R | 5′-GGCGAACCAGGAGAAGATTG-3′ | ||
ureA | ureA.109F | 5′-TAACTATCCCGAATCCGTGG-3′ | 146 |
ureA.213R | 5′-GGGATCATTTCTGGTATGCCT-3′ | ||
iha | iha.138F | 5′-ACGCAGCCGCCAGTGTT-3′ | 186 |
iha.282R | 5′-CCATCAATCAGTATCAGCGTGTAA-3′ | ||
invG | invG.481F | 5′-TGACCTGGTCGTTAATGCTG-3′ | 133 |
invG.572R | 5′-CGCCACGTAACTCATAAGTCC-3′ | ||
spaP | spaP.143F | 5′-GGACTTCAGCAAGTGCCATC-3′ | 173 |
spaP.275R | 5′-ACCACTCATGCCTGTCTCAA-3′ | ||
Z4326 | ShET.1137F | 5′-TCATGCAGACGCAATAAAGG-3′ | 125 |
ShET.1221R | 5′-GATACGCAAGAAGTAATCCTGG-3′ | ||
fyuA | fyuA.924F | 5′-GCAGCAGCAGCATTATTCG-3′ | 495 |
mdh | mdh.269F | 5′-GGTATGGATCGTTCCGACCT-3′ | 304 |
mdh.530R | 5′-GGCAGAATGGTAACACCAGAGT-3′ |