Table 2. Summary of the whole genome read mapping of bacterial isolates against the reference sequences.

Isolate	Total read number/average quality (PHRED)	Reference species	Reference assembly accession	Genome segment	Mapped reads	Mapping coverage, percent	Average coverage depth	Average mapping quality
Ea08KZ	9,461,292/39.2	Erwinia amylovora	GCA_043228865	Chromosome	8,830,929	99.8	339.2	59
				Plasmid pEA29	27,391	100	134.8	60
Ea09KZ	11,729,034/39.2	Erwinia amylovora	GCA_043228865	Chromosome	11,052,898	99.6	431.3	58.9
				Plasmid pEA29	35,957	99.9	179.1	60
Ps01KZ	12,358,254/39.3	Pseudomonas syringae	GCA_018394375.1	Chromosome	9,929,715	86.7981	236.595	58.7
Ps02KZ	13,796,400/39.2	Pseudomonas syringae	GCA_018394375.1	Chromosome	11,605,402	90.1	282.6	59.1
Ps03KZ	13,542,476/39.2	Pseudomonas syringae	GCA_018394375.1	Chromosome	8,093,441	73.9	165.8	57
		Pseudomonas tremae *	GCA_023278125*	Chromosome	12,590,801	91	318.3	59.5

Notes.

^*Realignment based on the species re-assignment based on ANI results (Table 3).