Table II.
Presequence properties of identified mitochondrial proteins from Arabidopsis
| No.a | Protein | Length of Presequence | Ser | Arg/Lys | Glu/Asp | Arg at Cleavage Site? | P of Mitochondria (MITOPROT)b |
|---|---|---|---|---|---|---|---|
| no. of amino acids | % | ||||||
| 2 | ATP synthase, subunit δ′ | 26 | 23 | 19 | 0 | +3 | 0.985 |
| 3 | Complex I, 18-kD subunit | 11 | 0 | 18 | 0 | +4 | 0.892 |
| 4 | Unknown mitochondrial protein | 89 | 9 | 13 | 3 | +2 | 0.384 |
| 5 | Gly-rich RNA-binding protein | 34 | 15 | 9 | 0 | +4 | 0.743 |
| 9 | Nucleoside diphosphate kinasec | 85 | 19 | 11 | 4 | – | 0.997 |
| 10 | Inosine 5-monophosphatedehydrogenase | 39 | 15 | 10 | 0 | +2 | 0.855 |
| 13 | ATP synthase, subunit δ | 36 | 19 | 17 | 3 | +3 | 0.881 |
| 14 | Superoxide dismutase | 27 | 12 | 26 | 4 | +2 | 0.960 |
| 16 | Peroxyredoxin | 28 | 21 | 18 | 0 | +3 | 0.985 |
| 18 | Unknown mitochondrial protein | 58 | 19 | 16 | 0 | +2 | 0.989 |
| 21 | ATP synthase, 24-kD subunit | 32 | 9 | 12 | 0 | +3 | 0.900 |
| 26 | Pyruvate dehydrogenase E1β | 37 | 8 | 19 | 5 | – | 0.910 |
| 29 | Succinyl-CoA-ligase, β-subunit | 26 | 15 | 23 | 0 | +2 | 0.934 |
| 32 | ATP synthase, subunit β | 51 | 20 | 18 | 2 | +5 | 0.997 |
| 33 | NAD-dependent malatedehydrogenase | 22 | 23 | 23 | 0 | +2 | 0.998 |
| 35 | Succinyl-CoA-ligase, α-subunit | 42 | 26 | 14 | 2 | +3 | 0.971 |
| 37 | Cytochrome b5 reductasec | 60 | 17 | 8 | 0 | – | 0.995 |
| Average | 41.4 | 15.9 | 16.1 | 1.35 | – | 0.904 | |
The nos. refer to the nos. given in Figure 3.
The probability for mitochondrial targeting was calculated using MITOPROT (Claros and Vincens, 1996).
These proteins are targeted to the mitochondrial intermembrane space and have a bipartite presequence.