IFN-I	Type I Interferon
TNFR	Tumor Necrosis Factor Receptor
TNF	Tumor Necrosis Factor
IBD	Inflammatory Bowel Disease
RNA-Seq	RNA Sequencing
CD	Crohn’s Disease
NR-CD	Non-Responsive CD
R-CD	Responsive CD
IEC	Intestinal epithelial cells
IFNs	Interferons
scRNA-Seq	Single cell RNA Sequencing
TNFR1	TNF receptor 1
Wnt	Wingless related integration site
TA cells	Transit amplifying cells
WAE	Wound-associated epithelium
KRT6	Keratin 6
KRT17	Keratin 17
CLU	Clusterin
SCA1	Stem cell antigen 1
TACSTD2/TROP2	Tumor associated calcium signal transducer 2/Trophoblast cell surface antigen 2
ANXA1	Annexin A1
CXCL1	Chemokine (C-X-C motif) ligand 1
CXCL10	Chemokine (C-X-C motif) ligand 10
CXCL11	Chemokine (C-X-C motif) ligand 11
YAP/TAZ	Yes-associated protein/Transcriptional coactivator with PDZ-binding motif
IL6	Interleukin 6
REG4	Regenerating islet derived family member 4
DUOX2	Dual oxidase 2
CCL20	C-C motif chemokine ligand 20
GLDN	Gliomedin
OLFM4	Olfactomedin 4
MUC1	Mucin 1
TNIP3	Tumor Necrosis Factor Alpha-Induced Protein interacting protein 3
S100P	S100 calcium binding protein P
DOCK4	Dedicator of cytokinesis 4
TNFR2	TNF receptor 2
PAFR	Platelet activating factor receptor
EGFR	Epidermal growth factor receptor
Src	Proto-oncogene tyrosine-protein kinase Src
Rac1	Rac family small GTPase 1
PGE2	Prostaglandin E2
AOM/DSS	Azoxymethane/dextran sulfate sodium
STAT1	Signal transducer and activator of transcription 1
p21/CDKN1A	Cyclin dependent kinase inhibitor 1A
TP53/p53	Tumor protein p53
Apol9a/b	Apolipoprotein L9a and L9b
ERK	Extracellular signal regulated kinase
IEC	Intestinal epithelial cell
Ifnar1	Interferon alpha and beta receptor subunit 1
CK1α	Casein kinase 1 alpha
AREG	Amphiregulin
NF-κB	Nuclear factor kappa B
MAPK	Mitogen activated protein kinase
IRF1	Interferon regulatory factor 1