BTA	Bos taurus autosome
CV	Cross-validation
DAVID	Database for Annotation, Visualization and Integrated Discovery
FIS	Inbreeding coefficient of an individual relative to the subpopulation
FIT	Inbreeding coefficient of an individual relative to the total population
FST	Fixation index
GBTS	Genotyping by target sequencing
GCA	Genome assembly accession
GGP	GeneSeek Genomic Profiler
GO	Gene Ontology
GO-BP	Gene Ontology biological process
GO-CC	Gene Ontology cellular component
GO-MF	Gene Ontology molecular function
HE	Expected heterozygosity
HO	Observed heterozygosity
Hu	Hungarian buffalo population
KEGG	Kyoto Encyclopedia of Genes and Genomes
LD	Linkage disequilibrium
MAF	Minor allele frequency
NJ	Neighbor-joining
PCA	Principal component analysis
PLINK	Whole-genome association analysis toolset
QC	Quality control
Ro	Romanian buffalo population
ROH	Runs of homozygosity
SNP	Single-nucleotide polymorphism
UMD	University of Maryland bovine genome assembly
VCF	Variant call format
WGS	Whole-genome sequencing
ΔAF	Absolute allele-frequency difference
π	Nucleotide diversity
r2	Squared correlation coefficient
ZFST	Standardized FST
ZΔAF	Standardized absolute allele-frequency difference