Table 3.
Percent of the pre-insertion loci | Percent of the draft genome sequence | |
SINEs | 3% | 13.1% |
LINES | 13.3% | 20.4% |
LTR elements | 5% | 8.3% |
DNA elements | 2.2% | 2.8% |
Satellite/centromeric | 0.5% | ND |
Repeat did not meet criteria* | 14% | |
Unique sequence | 61% | 55% |
Total | 99% | 99.6 |
*The following criteria had to be met in order for a repeat to have been considered a target for L1 insertion: its number of substitutions could be no more than 25% as reported by the RepeatMasker program, and it had to span at least half of the pre-insertion sequence analyzed.