Table 2.
Non-rice RTs used in phylogenies
| Name of retrotransposon | Accession number | Host organism |
| Opie-2 | T04112 | Z. mays |
| Hopscotch | T02087 | Z. mays |
| Fourf | AAK73108 | Z. mays |
| Sto-4 | T17429 | Z. mays |
| Zmr-1* | S27768 | Z. mays |
| Endovir1-1 | AAG52949 | A. thaliana |
| Ta1-2 | S23315 | A. thaliana |
| Atr-1* | NP_175303 | A. thaliana |
| Atr-2* | T01860 | A. thaliana |
| Atr-3* | NP_178752 | A. thaliana |
| Atr-4* | NP_174802.1 | A. thaliana |
| Atr-5* | AAF13073.1 | A. thaliana |
| Atr-6* | NP_179047 | A. thaliana |
| Retrosor1 | AAD19359 | Sorghum bicolor |
| Retrosor3 | AAD22153 | S. bicolor |
| Daniela | AF326781† | Triticum aestivum |
| Acr-1* | CAA73042 | Ananas comosus |
*Previously unnamed RT found by BLAST searches of the GBRD, using rice RTs found in our study as queries. Acr, Ananas comosus retrotransposon; Atr, A. thaliana retrotransposon; Zmr, Z. mays retrotransposon.