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. 2002 Sep 23;3(10):research0056.1–research0056.24. doi: 10.1186/gb-2002-3-10-research0056

Table 4.

Summary of various domains present in Arabidopsis EF-hand-containing proteins and their InterPro accession numbers

Domain* Accession number Protein type
ATP_GTP_A IPR001687 Binding site motif
Calflagin IPR003299 Calcium-binding
Recoverin IPR002048 Calcium-binding
S-100/ICaBP type CBP IPR001751 Calcium-binding
Adptrnslcase IPR000213 Carrier
Cation (ca, na) pore region IPR001682 Carrier
Graves disease IPR002167 Carrier
Mitoch_carrier IPR002067 Carrier
Potassium channel IPR001622 Carrier
PTM IPR003880 Carrier
bHLH IPR001092 Dimerization
BTB/POZ domain IPR000210 Dimerization
Biotin operon repressor IPR004209 DNA interaction
DDT domain IPR004022 DNA binding
HLH_Myc IPR003015 DNA binding
Myb DNA binding domain IPR001005 DNA binding
Elongation factor aEF-2 IPR004543 Elongation factor
EFG_C IPR000640 Elongation factor
GTP_EFTU(_D2) IPR004161 Elongation factor
pfkB IPR002173 Enzyme
Aminoacyl-transfer RNA syn class II IPR002106 Enzyme
AMP-dependent synthetase and ligase IPR000873 Enzyme
ATP synthase alpha and beta subunit IPR000194 Enzyme
Cytb-245 hc IPR000778 Enzyme
Cytochrome P450 enzyme IPR001128 Enzyme
Euk protein kinase IPR000719 Enzyme
FAD_pyr_redox IPR001237 Enzyme
Ferric_reduct IPR002916 Enzyme
GatC IPR004415 Enzyme
GLFV_dehydrog IPR001625 Enzyme
PIP5K IPR002498 Enzyme
PIPLC IPR001992 Enzyme
Plant peroxidase IPR000823 Enzyme
Protein phosphatase 2C subfamily IPR000222 Enzyme
PS_Darbxylase, Porpobil_deam IPR003817 Enzyme
Pyr_redox IPR001237 Enzyme
Small GTPase IPR001806 Enzyme
ThiF_family IPR000594 Enzyme
UBACT IPR000127 Enzyme
Jacalin-related lectin domain IPR001229 Lectin
Dynamin family IPR001401 Microtubule associated
NAD-binding site IPR000205 NAD binding
No apical meristem protein IPR003441 Plant development
Domain* Accession Protein type
Serpin IPR000215 Protease inhibitor
14-3-3 IPR000308 Protein interaction
Calponin homology IPR001715 Protein interaction
EPS15 repeat IPR000261 Protein interaction
F-box domain IPR001810 Protein interaction
SET-domain of transcriptional regulators IPR001214 Protein interaction
Ubiquitin-associated domain IPR003903 Protein interaction
Zn-finger-ZZ type IPR000433 Protein interaction
Zn-finger-FYVE IPR000306 Protein interaction
Zn-finger-Ra-binding IPR001876 Protein interaction
PPR repeats IPR000285 Repeat
TPR IPR001440 Repeat
Josephin, UIM IPR002950 Repeat
Kelch repeat IPR001798 Repeat
ATHILA IPR004312 Retrotransposon
NPH3 IPR004249 Signal transduction
ER_TARGET IPR000886 Targeting
NLS_BP IPR001472 Targeting
PHD-finger IPR001965 Transcription
eIF4-gamma/eIF IPR003307 Translation
PTS_HPR_SER IPR002114 Transport
Nucleoside_tran IPR002259 Transport
En/Spm-like transposon proteins IPR004242 Transposon

*See Table 1 for explanation of domain abbreviations.