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. 2002 Sep 26;3(10):research0057.1–research0057.14. doi: 10.1186/gb-2002-3-10-research0057

Table 1.

Genes predicted on the BMBAC01L03/BMBAC01P19 contig

B. malayi open reading frame Predicted cDNA length (bp) Predicted peptide length Number of introns C. elegans ortholog Percent identity with C. elegans ortholog Number of introns in C. elegans ortholog Number of shared intron positions with C. elegans ortholog Putative identity
BMBAC01L03.1 1340* 446* 7* CeF14B4.3 58 3 3 Amino-terminal fragment of the β subunit of RNA polymerase I
BMBAC01L03.2 693 230 6 CeF43G9.5 68 3 1 Pre-mRNA cleavage factor
BMBAC01L03.3 1239 412 8 - - - - Contains LON-ATP-dependent serine protease domain
BMBAC01L03.4 630 209 2 CeF39B2.10 57§ 3 1 Contains dnaJ domain
BMBAC01L03.5 918 305 6 CeF43G9.3 58 6 2 Mitochondrial carrier protein
BMBAC01P19.1 (Bm-mif-1) 535 115 2 CeY56A3A.3 41 2 2 Macrophage-migration- inhibitory factor homolog
BMBAC01P19.2a/b (Bm-pbr-1) 5955/5748 1934/1865 37/35 CeC26C6.1 34 14 9 Polybromo domain protein, BAF180 homolog
BMBAC01P19.3 a/b 1182/919 367/283 9/7 CeF43G9.4 44 8 2 Contains PWWP domain
BMBAC01P19.4 (Bm-dap-1) 446 111 1 CeT28F4.5 30 1 1 Homolog of mammalian death- associated protein DAP-1
BMBAC01P19.5a/b (Bm-ubr-1) 2679/2602 847/821 18/17 CeT28F4.4 27 12 5 Unknown
BMBAC01P19.6 804 190 4 CeF31C3.5 41 1 1 Conserved protein of unknown function
BMBAC01P19.7a/b 1039/932* 274/298* 6/7* CeC36B1.12 60# 3 2 Carboxy-terminal fragment of a novel transmembrane protein

*Gene fragments (see text). BMBAC01L03.1 gene fragment aligned with the amino-terminal 450 amino acids of CeF14B4.3. Number of introns in the aligned portion of the C. elegans ortholog. §Percent identity over the dnaJ domains of BMBAC01L03.4 and CeF39B2.10. Percent identity over the PWWP domains of BMBAC01P19.3 and CeF43G9.4. #The gene fragment of BMBAC01P19.7 aligned with the carboxy-terminal 380 amino acids of CeC36B1.12.