| ALRA | Adaptively thresholded Low-Rank Approximation |
| ARI | Adjusted Rand Index |
| CBMC | Cord Blood Mononuclear Cell |
| CITE-seq | Cellular Indexing of Transcriptomes and Epitopes by Sequencing |
| cVAE | Conditional Variational Autoencoder |
| DCA | Deep Count Autoencoder |
| DDIM | Denoising Diffusion Implicit Model |
| DDPM | Denoising Diffusion Probabilistic Model |
| DEG | Differentially Expressed Gene |
| HVG | Highly Variable Gene |
| kNN | k-Nearest Neighbors |
| logFC | Log Fold Change |
| MAGIC | Markov Affinity-based Graph Imputation of Cells |
| MLP | Multilayer Perceptron |
| MSE | Mean Squared Error |
| NMI | Normalized Mutual Information |
| PBMC | Peripheral Blood Mononuclear Cell |
| RMSE | Root Mean Square Error |
| scVI | single-cell Variational Inference |
| scRNA-seq | Single-cell RNA Sequencing |
| UMI | Unique Molecular Identifier |