mTORC1	mechanistic target of rapamycin complex 1
AMPK	5′-prime-AMP-activated protein kinase
ULK1	Unc-51 Like Autophagy Activating Kinase
PI3KC	phosphoinositide 3-kinase complex
PI3P	phosphatidylinositol 3-phosphate
LC3B	microtubule-associated protein 1A/1B-light chain 3
LAMP	lysosomal-associated membrane protein
Ub	ubiquitin
BNIP3L/NIX	BCL2 Interacting Protein 3 Like
BNIP3	BCL2 Interacting Protein 3
FUNDC1	FUN14 domain containing 1
ROS	reactive oxygen species
PEX	peroxin protein
PMP	peroxisomal membrane protein
NBR1	neighbour of BRCA1 gene 1
NUFIP-1	nuclear fragile X mental retardation-interacting protein 1
ZNHIT3	zinc finger HIT domain-containing protein 3
ER	endoplasmic reticulum
LIR	LC3B-interacting region
AIM	ATG8-interacting motif
TRIM16	tripartite motif containing 16.
FBXO27	F-Box Protein 27
ELDR	endolysosomal damage response
TEX264	Testis Expressed 264
GABARAP	GABAA receptor-associated protein
LDs	lipid droplets
FXR	nuclear receptor farnesoid X receptor
PPARα	peroxisome proliferator-activated receptor alpha
CREB	transcriptional activator cAMP response element-binding protein
SOCE	store-operated calcium entry
KSS	Kearns–Sayre syndrome
CPEO	chronic progressive external ophthalmoplegia
mtDNA	mitochondrial DNA
NDP52	nuclear domain 10 protein 52
TAX1BP1	Tax1 binding protein 1
PERK	PRKR-like endoplasmic reticulum kinase
HSPA4	heat shock protein family A
DNAJC	DnaJ heat shock protein family
MERRF	myoclonic epilepsy with ragged-red fibres
MELAS	mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes
iPSCs	induced pluripotent stem cells
RPE	retinal pigment epithelium
STAT3	signal transducer and activator of transcription 3
MNRR1	mitochondrial nuclear retrograde regulator 1
MFM	myofibrillar myopathy
CASA	chaperone-assisted selective autophagy
β-FAO	β-oxidation of fatty acids
VLCADD	very-long-chain acyl-CoA dehydrogenase deficiency
MCADD	medium-chain acyl-CoA dehydrogenase deficiency
CPT	carnitine Palmitoyltransferase