| RNA-seq | RNA sequencing |
| SRA | Sequence Read Archive |
| NCBI | National Center for Biotechnology Information |
| ML | Machine learning |
| UMAP | Uniform Manifold Approximation and Projection |
| WGCNA | Weighted gene co-expression network analysis |
| GO | Gene Ontology |
| HSP | Heat-shock protein |
| ABA | Abscisic acid |
| FPKM | Fragments per kilobase of transcript per million mapped reads |
| PCA | Principal component analysis |
| CDS | Coding sequence |