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. 2006 Jan;50(1):171–177. doi: 10.1128/AAC.50.1.171-177.2006

TABLE 1.

Oligonucleotide primers

Target gene GenBank accession no. Primer Primer sequence Purpose
hlb X61716 hlb-2 AGCTTCAAACTTAAATGTCA Multiplex PCR
hlb-527 CCGAGTACAGGTGTTTGGTA
sak AF424783 sak-for GTGCATCAAGTTCATTCGAC Multiplex PCR, Northern probe
sak-rev TAAGTTGAATCCAGGGTTTT
φ13 integrase AF424783 φ13int-for GCTTTGAAATCAGCCTGTAG Multiplex PCR
φ13 attP AF424783 attPst-for TCTAGCTTTTGGGGTGTACATTCC DNA standard
attPst-rev GCTTTGAAATCAGCCTGTAGAG
attP-for TTTTATTTTATATGGGGTATTATTGA Quantitative LightCycler PCR
attP-rev GTGTATTCTCATTTGTTAGAAGAAAA
gyrB D10489 gyrB-219 TTATGGTGCTGGGCAAATACA DNA standard
gyrB-864 GTACGATTTAATACCGCCCTCATA
gyrB-297 TTAGTGTGGGAAATTGTCGATAAT Quantitative LightCycler PCR
gyrB-547 AGTCTTGTGACAATGCGTTTACA
recA L25893 recA-153 AGATAATGCGCTAGGTGTAGGTGG Northern probe
recA-786 AGCTACTCTAAATGGTGGTGCCAC