TABLE 3.
Strain | Relevant genotype | Nuo activityb | Relative activityc |
---|---|---|---|
DM8000 | Wild type | 23,508 ± 136 | 1.00 |
DM7220 | iscS | 3,990 ± 397 | 0.17 |
DM7644 | cyaY | 11,420 ± 518 | 0.48 |
DM7642 | apbC cyaY | 13,631 ± 810 | 0.58 |
DM7643 | cyaY yggX | 17,790 ± 513 | 0.76 |
DM5986 | yggX apbC | 6,146 ± 1239 | 0.26 |
DM7641 | yggX apbC cyaY | 3,375 ± 213 | 0.14 |
Strains were grown in nutrient broth to an optical density at 650 nm of 0.5. Crude cell-free extracts were generated by sonication as has been described previously (35). The activity of the iscS strain reflects the level of cluster synthesis maintained in a strain lacking the major Fe-S cluster biosynthetic operon. All loci listed for relevant genotypes were inactivated by insertion.
Nuo activity was measured as described previously, by using d-amino-NADH to distinguish it from the cytoplasmic activity encoded by the ndh gene (39), and is reported as a specific activity (ΔA600/min/mg protein [average ± standard deviation]).
Relative activity was obtained by dividing the activity of the relevant strain by the activity of the wild-type parent.