. 2005 Dec 28;34(Database issue):D632–D636. doi: 10.1093/nar/gkj034

Table 1.

Main contents of the database systems

Database	Contents
CAGE Basic Database	RNA sample information
	CAGE library information
	CAGE clone plate/spot
	CAGE clone sequence
	CAGE clone sequence quality
	CAGE tag sequence
	CAGE tag mapping status
	Associations of CAGE tags with CTSS
	Associations of CTSS with TCs
	Associations of TCs with transcript and TUs
CAGE Analysis Database	Base pair level expression profile
	TC expression profile within TUs
	Statistical significance expression fluctuations
	Presence of predicted core promoter elements^a in upstream region
	Presence of conserved genome region between human and mouse (axtNet)
	Presence of CpG islands
	Counts of TC related mRNA, 5′-EST, GIS/GSC ditags
Genomic Elements Database	TC
	Predicted core promoter elements^a
	mRNA
	GIS/GSC ditag
	5′- and 3′-ESTs
	Candidates of imprited transcripts in EICO DB
	Transcription factors listed in TFdb
	Gene prediction^b
	CpG islands^b
	Repeat detected by repeatmasker and tandem repeats finder^b
	Assemble gap^b
	Conserved genome region between human and mouse (axtNet)^b

^aTATA box, CCAAT box, GC box and initiator.

^bRetrieved from the UCSC Genome Browser Database.