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. 2005 Dec 28;34(Database issue):D86–D89. doi: 10.1093/nar/gkj129

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© The Author 2006. Published by Oxford University Press. All rights reserved

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An example of comparative analysis with any pair of TSSs. We show paralogous genes, protamine 1 (PRM1: NM_002761) and protamine 2 (PRM2: NM_002762), as an example. (A) By inputting the IDs of clones of PRM1 (TST01431) and PRM2 (TST00906) representative TSSs, users can obtain the results (B and C). (B) LALIGN analysis between two sequences. Note: smaller numbers indicate more highly conserved blocks. In this figure, the most conserved region between a pair is block 0; however, it includes Alu repeats. (C) The detail of the alignment of block 7. The putative TATA-boxes are marked with boxes.