Table 2.

Summary of the new website features and web services, including server location

Feature	Mirror site	Specific URL
Clan summaries	UK, Sweden	Follow links from: http://www.sanger.ac.uk/Software/Pfam/browse/clans.shtml, http://pfam.cgb.ki.se/browse/clans.html
Clan alignments/relationship diagrams	UK	Example URLs: http://www.sanger.ac.uk//Software/Pfam/data/clans/alignment/CL0132.shtml, http://www.sanger.ac.uk/cgi-bin/Pfam/clanacc?CL0132
Coloured alignments	Sweden	Example: http://pfam.cgb.ki.se/cgi-bin/getalignment.pl?name=TAF&acc=PF02969&type=seed&format=msaviewer&size=10&color=0
Domain images/XML upload	UK	http://www.sanger.ac.uk/cgi-bin/Pfam/xml_upload.pl
HMM logo	UK	http://www.sanger.ac.uk/cgi-bin/software/analysis/logomat-m.cgi?pfamid=PF02969
Domain query tools	Sweden	http://pfam.cgb.ki.se/cgi-bin/domainquery/DQL_sel_domains.pl
Core web services	UK	http://services.sanger.ac.uk/pfamWebService/services/pfamWebService?wsdl
Web service Perl client	UK	ftp://ftp.sanger.ac.uk/pub/databases/Pfam/Tools/pfamWSclient.pl
DQL web service	Sweden	http://www.cgb.ki.se:8080/pfam/WSFacadeServicePort?wsdl
PfamAlyzer	Sweden	http://pfam/cgb.ki.se/pfamalyzer