TABLE 3.
Oligonucleotides used for PCR, sequencing, and mutagenesis
| Name | Sequence (5′→3′) |
|---|---|
| T7 promoter | TAATACGACTCACTATAGGG |
| GerE-Seq1 | GCTCTCACCTTAGCAAG |
| GerE-964F | GCCCTTCTTACATATGATATCTCG |
| GerE-5′For | GGAGATGAAAAAAGATGAAG |
| GerE-5′Rev | GCCAGTCTAGAGTAACCCTCCTTGCTAG |
| GerE-3′For | GCCGGGTACCGCTGTTTGTTTGGAACATTTCG |
| GerE-3′Rev | GCCGGAATTCGATGTATCCTGACAACACGTCTG |
| E5A-For | GAAGGAGAAAGCATTTCAATCG |
| E5A-Rev | CGATTGAAATGCTTTCTCCTTC |
| F6A-For | GAAGGAGAAAGAAGCTCAATCGAAGCCG |
| F6A-Rev | CGGCTTCGATTGAGCTTCTTTCTCCTTC |
| Q7A-For | GAGAAAGAATTTGCATCGAAGCCGTCG |
| Q7A-Rev | CGACGGCTTCGATGCAAATTCTTTCTC |
| S8A-For | GAAAGAATTTCAAGCGAAGCCGTCG |
| S8A-Rev | CGACGGCTTCGCTTGAAATTCTTTC |
| K9A-For | GAATTTCAATCGGCGCCGTCGCTAACG |
| K9A-Rev | CGTTAGCGACGGCGCCGATTGAAATTC |
| P10A-For | GAATTTCAATCGAAGGCGTCGCTAACG |
| P10A-Rev | CGTTAGCGACGCCTTCGATTGAAATTC |
| S11A-For | CAATCGAAGCCGGCGCTAACGAAAAG |
| S11A-Rev | CTTTTCGTTAGCGCCGGCTTCGATTG |
| K14A-For | GCCGTCGCTAACGGCAAGAGAAAGAGAAG |
| K14A-Rev | CTTCTCTTTCTCTTGCCGTTAGCGACGGC |
| Q25A-For | CGAATTGCTCGTTGCAGATAAGACAAC |
| Q25A-Rev | GTTGTCTTATCTGCAACGAGCAATTCG |
| K27A-For | GCTCGTTCAAGATGCGACAACAAAGGAG |
| K27A-Rev | CTCCTTTGTTGTCGCATCTTGAACGAGC |
| K30A-For | CAAGATAAGACAACAGCAGAGATTGCAAGCGAGC |
| K30A-Rev | GCTCGCTTGCAATCTCTGCTGTTGTCTTATCTTG |
| F37A-For | GATTGCAAGCGAGCTAGCTATCAGTGAGAAAACCG |
| F37A-Rev | CGGTTTTCTCACTGATAGCTAGCTCGCTTGCAATC |
| K41A-For | CTATTTATCAGTGAGGCAACCGTTCGAAAACC |
| K41A-Rev | GGTTTCGAACGGTTGCCTCACTGATAAATAG |
| R44A-For | GTGAGAAAACCGTTGCAAACCATATTTCAAATG |
| R44A-Rev | CATTTGAAATATGGTTTGCAACGGTTTTCTCAC |
| H46A-For | GAAAACCGTTCGAAACGCTATTTCAAATGCCATG |
| H46A-Rev | CATGGCATTTGAAATAGCGTTTCGAACGGTTTTC |
| Q52A-For | CAAATGCCATGGCGAAATTGGGTGTG |
| Q52A-Rev | CACACCCAATTTCGCCATGGCATTTG |
| L67A-For | GTTGTTGAGCTTGCTAGAATGGGTGAG |
| L67A-Rev | CTCACCCATTCTAGCAAGCTCAACAAC |
| E73A-For | GGGTGAGCTAGCGCTTTAATCCTTG |
| E73A-Rev | CAAGGATTAAAGCGCTAGCTCACCC |
| L74A-For | GGGTGAGCTAGAGGCTTAATCCTTGCCGG |
| L74A-Rev | CCGGCAAGGATTAAGCCTCTAGCTCACCC |
| AmyE-Back | ACCTGCATTTGCCAGCACAACGCC |
| CotC139-For | TGGGCCGATGAAAAATCGGCTC |
| CotC-Rev | TGTCGTAATCACAGTCATAATC |
| CotX-BcII | GAGCAGCTCATTGAACTGATCA |
| CotX-Hind | CGTGTTTTTCTTAAGCTTTCTC |