Table 2.
GenBank accession numbers of Diaporthe section Sojae used in multiloci phylogenetic analyses.
| Species name | Strain number | ITS | tef1-α | tub2 | cal | his3 |
| Diaporthe ambigua | CBS 114015 | MH862953 | KC343736 | KC343978 | KC343252 | KC343494 |
| D. ambigua | CBS 117167 | KC343011 | KC343737 | KC343979 | KC343253 | KC343495 |
| D. biguttulata | CFCC 52584 | MH121519 | MH121561 | MH121598 | MH121437 | MH121477 |
| D. biguttulata | CFCC 52585 | MH121520 | MH121562 | MH121599 | MH121438 | MH121478 |
| D. brasiliensis | CBS 133183 | KC343042 | KC343768 | KC344010 | KC343284 | KC343526 |
| D. brasiliensis | LGMF926 | KC343043 | KC343769 | KC344011 | KC343285 | KC343527 |
| D. caatingaensis | URM7485 | KY085927 | KY115604 | KY115601 | KY115598 | KY115605 |
| D. caatingaensis | URM7484 | KY085928 | N/A | KY115602 | KY115599 | KY115606 |
| D. caryae | CFCC 52563 | MH121498 | MH121540 | MH121580 | MH121422 | MH121458 |
| D. caryae | CFCC 52564 | MH121499 | MH121541 | MH121581 | MH121423 | MH121459 |
| D. cerradensis | CMRP4331 | MN173198 | MT311685 | MW751671 | MW751655 | MW751663 |
| D. cerradensis | CMRP4324 | MN173195 | MT311681 | MW751667 | MW751651 | MW751659 |
| D. chiangraiensis | MFLUCC 17-1669 | MF190119 | MF377598 | N/A | N/A | N/A |
| D. chiangraiensis | MFLUCC 17-1670 | MF190118 | MF377599 | N/A | N/A | N/A |
| D. cinnamomi | CFCC 52569 | MH121504 | MH121546 | MH121586 | N/A | MH121464 |
| D. cinnamomi | CFCC 52570 | MH121505 | MH121547 | MH121587 | N/A | MH121465 |
| D. citriasiana | ZJUD30 | JQ954645 | JQ954663 | KC357459 | KC357491 | N/A |
| D. citriasiana | ZJUD81 | KJ490616 | KJ490495 | KJ490437 | N/A | KJ490558 |
| D. coracoralinae | URM 8912 | PP192078 | PP430449 | PP402241 | PP408214 | PP421133 |
| D. coracoralinae | IR7 | PP192079 | N/A | PP402242 | PP408215 | PP421134 |
| D. coracoralinae | IR6A | PP192077 | N/A | PP402239 | PP408213 | N/A |
| D. coracoralinae | AR11B | N/A | N/A | PP402236 | PP408212 | PP421132 |
| D. coracoralinae | MFLUCC 26-0215 | PZ458814 | PZ501085 | PZ501081 | PZ501083 | PZ501089 |
| D. cyatheae | YMJ-1364 | JX570889 | KC465406 | KC465403 | KC465410 | N/A |
| D. discoidispora | ZJUD89 | KJ490624 | KJ490503 | KJ490445 | N/A | KJ490566 |
| D. eleutherrhenae | 01 | OK017069 | OK017070 | OK017071 | N/A | N/A |
| D. eleutherrhenae | 02 | OK648457 | OK648458 | OK648459 | N/A | N/A |
| D. eres (D. alnea) | CBS 146.46 | KC343008 | KC343734 | KC343976 | KC343250 | KC343492 |
| D. eres (D. nobilis) | CBS 587.79 | KC343153 | KC343879 | KC344121 | KC343395 | KC343637 |
| D. fici-septicae | NCYUCC 19-0108 | MW114349 | MW192212 | MW148269 | N/A | N/A |
| D. fici-septicae | MFLUCC 20-0178 | MW114348 | MW192211 | MW148268 | N/A | N/A |
| D. foliorum | CMRP 1321 | MT576688 | MT584310 | MT584327 | MT584341 | MT584338 |
| D. foliorum | CMRP 1320 | MT576671 | MT584309 | MT584328 | MT584342 | MT584340 |
| D. ganjae | CBS 180.91 | KC343112 | KC343838 | KC344080 | KC343354 | KC343596 |
| D. ganjae | PSCG489 | MK626955 | MK654897 | MK691287 | MK691202 | MK726204 |
| D. goulteri | BRIP 55657a | KJ197290 | KJ197252 | KJ197270 | N/A | N/A |
| D. infecunda | CBS 133812 | KC343126 | KC343852 | KC344094 | KC343368 | KC343610 |
| D. infecunda | LGMF908 | KC343127 | KC343853 | KC344095 | KC343369 | KC343611 |
| D. iteae | MFLUCC 26-0214 | PZ458813 | PZ501084 | PZ501080 | PZ501082 | PZ501088 |
| D. juglandigena | GUCC 422.16 | OP581229 | OP688534 | OP688559 | N/A | N/A |
| D. juglandigena | GUCC 422.161 | OP581230 | OP688535 | OP688560 | N/A | N/A |
| D. kyushuensis | STE-U2675 | AF230749 | N/A | N/A | N/A | N/A |
| D. kyushuensis | ch-D-1 | AB302250 | N/A | N/A | N/A | N/A |
| D. leucospermi | CBS 111980 | N/A | KY435632 | KY435673 | KY435663 | KY435653 |
| D. leucospermi | CAA483 | KY435635 | KY435625 | KY435666 | KY435656 | KY435645 |
| D. longispora | CBS 194.36 | KC343135 | KC343861 | KC344103 | KC343377 | KC343619 |
| D. mangroviorum | MFLUCC 24-0445 | PQ699353 | PV769004 | PV753771 | PV753687 | PV752668 |
| D. mangroviorum | MFLUCC 24-0446 | PQ699362 | PV769015 | PV753782 | PV753689 | PV752682 |
| D. mayteni | CBS 133185 | KC343139 | KC343865 | KC344107 | KC343381 | KC343623 |
| D. middletonii | BRIP 54884e | KJ197286 | KJ197248 | KJ197266 | N/A | N/A |
| D. middletonii | BRIP 57329 | KJ197285 | KJ197247 | KJ197265 | N/A | N/A |
| D. minusculata | CGMCC3.20098 | MT385957 | MT424692 | MT424712 | MW022475 | MW022499 |
| D. minusculata | GZCC 19-0345 | MT797184 | MT793027 | MT793038 | MW022476 | MW022500 |
| D. orixae | KUNCC 21-10714 | OK283041 | N/A | N/A | OK484485 | OK484486 |
| D. orixae | GZCC 21-1085 | OL889852 | OL944724 | OL944726 | N/A | N/A |
| D. oxe | CBS 133186 | KC343164 | KC343890 | KC344132 | KC343406 | KC343648 |
| D. oxe | CBS 133187 | KC343165 | KC343891 | KC344133 | KC343407 | KC343649 |
| D. pachirae | CDA 728 | MG559537 | MG559539 | MG559541 | MG559535 | N/A |
| D. pachirae | CDA 730 | MG559538 | MG559540 | MG559542 | MG559536 | N/A |
| D. paranensis | CBS 133184 | KC343171 | KC343897 | KC344139 | KC343413 | KC343655 |
| D. paranensis | LMICRO417 | KY461115 | KY461116 | N/A | N/A | N/A |
| D. passiflorae | CBS 132527 | JX069860 | N/A | N/A | N/A | KY435654 |
| D. passiflorae | DJY16A1-5 | MH595929 | MH621353 | MH621349 | N/A | N/A |
| D. quercicola | CSUFTCC104 | ON076567 | ON081659 | N/A | ON081670 | ON081667 |
| D. quercicola | CSUFTCC105 | ON076568 | ON081660 | N/A | ON081671 | ON081668 |
| D. raonikayaporum | CBS 133182 | KC343188 | KC343914 | KC344156 | KC343430 | KC343672 |
| D. raonikayaporum (D. neoraonikayaporum) | MFLUCC 14-1136 | KU712449 | KU749369 | KU743988 | KU749356 | N/A |
| D. rhizophoracearum | MFLUCC 24-0449 | PQ699356 | PV769008 | PV753774 | PV753681 | PV752671 |
| D. rhizophoracearum | MFLUCC 24-0450 | PQ699357 | PV769009 | PV753775 | PV753682 | PV752672 |
| D. sclerotioides | CBS 296.67 | MH858974 | KC343919 | KC344161 | KC343435 | KC343677 |
| D. sclerotioides | CBS 710.76 | KC343194 | KC343920 | KC344162 | KC343436 | KC343678 |
| D. sclerotioides (D. columnaris) | AR3612 | AF439625 | N/A | N/A | N/A | N/A |
| D. sclerotioides (D. columnaris) | ICMP 16836 | KC145883 | KC145999 | N/A | N/A | N/A |
| D. serafiniae | BRIP 55665a | KJ197274 | KJ197236 | KJ197254 | N/A | N/A |
| D. serafiniae | BRIP 54136 | KJ197273 | KJ197235 | KJ197253 | N/A | N/A |
| D. siamensis | MFLUCC 12-0300 | KT459417 | KT459451 | KT459435 | KT459467 | N/A |
| D. siamensis | MFLUCC 10-0573a | JQ619879 | JX275393 | JX275429 | JX197423 | N/A |
| D. submersa | GZCC 19-0129 | OP056717 | OP150556 | OP150633 | OP150710 | OP150786 |
| D. submersa | GZCC 22-0007 | OP056718 | OP150557 | OP150634 | OP150711 | OP150787 |
| D. tulliensis | BRIP 62248a | KR936130 | KR936133 | KR936132 | N/A | N/A |
| D. tulliensis | RST-1 | MN911382 | MT121969 | N/A | N/A | N/A |
| D. yunnanensis | CGMCC3.18289 | KX986796 | KX999188 | KX999228 | KX999290 | KX999267 |
| D. yunnanensis | LC8107 | KY491542 | KY491552 | KY491562 | KY491572 | N/A |
Notes: Sequences shaded in blue were isolated in this study. Sequences in bold are the ex-type strains. Unavailable sequences are indicated as “N/A”.