TABLE 5.
Combined analysis of transcriptome, proteome and metabolome.
| Leaves | Description of KEGG | Transcriptome | Proteomics | Metabolomics | Metabolite_ID | |||
|---|---|---|---|---|---|---|---|---|
| Ko-ID | Test/Ref* | P-value | Test/Ref # | P-value | Diff_metabolites_ in_pathway |
All_metabolites_ in_pathway |
||
| ko00500 | Starch and sucrose metabolism | 17/144 | 0.0023 | 5/15 | 0.0107 | − | − | − |
| ko00520 | Amino sugar and nucleotide sugar metabolism | 14/155 | 0.046992 | 4/14 | 0.0389 | − | − | − |
| ko00052 | Galactose metabolism | 10/63 | 0.0021 | 1 | 4 | neg7248 | ||
| ko00360 | Phenylalanine metabolism | 10/63 | 0.0021 | 1 | 2 | neg2827 | ||
| ko00061 | Fatty acid biosynthesis | 7/44 | 0.0097 | 1 | 1 | neg3117 | ||
| ko00073 | Cutin, suberine and wax biosynthesis | 4/27 | 0.0590 | 2 | 3 | pos5859, pos8974 | ||
| ko00350 | Tyrosine metabolism | 7/64 | 0.0618 | 2 | 6 | pos4799, pos1734 | ||
| ko00950 | Isoquinoline alkaloid biosynthesis | 5/35 | 0.0511 | 2 | 5 | pos6241, neg6379 | ||
| ko02010 | ABC transporters | 4/25 | 0.0463 | 2 | 17 | pos4107; neg3760 | ||
| Roots | ||||||||
| ko00592 | alpha-Linolenic acid metabolism | 13/57 | 8.70E-10 | 4/13 | 0.0125 | 3 | 3 | pos4424, neg8346, neg6553 |
| ko00940 | Phenylpropanoid biosynthesis | 18/236 | 2.1192e-05 | 1 | 5 | neg6209 | ||
| ko00410 | beta-Alanine metabolism | 6/45 | 0.0008 | 1 | 2 | neg3760 | ||
| ko00460 | Cyanoamino acid metabolism | 7/61 | 0.0007 | 2 | 5 | neg3760, pos975 | ||
| ko00260 | Glycine, serine and threonine metabolism | 6/67 | 0.0064 | 2 | 5 | pos7565, neg3760 | ||
| ko00052 | Galactose metabolism | 5/63 | 0.0204 | 1 | 4 | neg1004 | ||
| ko00630 | Glyoxylate and dicarboxylate metabolism | 5/65 | 0.0230 | 3 | 9 | Pos5702, neg3760, neg4075 | ||
| ko00910 | Nitrogen metabolism | 3/31 | 0.0417 | 1 | 1 | neg4075 | ||
| ko00770 | Pantothenate and CoA biosynthesis | 3/37 | 0.0648 | 1 | 3 | neg3760 | ||
| ko00591 | Linoleic acid metabolism | 4/12 | 0.0001 | 3/6 | 0.0068 | − | ||
| ko00900 | Terpenoid backbone biosynthesis | 5/62 | 0.0191 | 3/6 | 0.0068 | |||
| ko00999 | Biosynthesis of other secondary metabolites | 2/5 | 0.0473 | 5 | 42 | neg_7370; pos_2997; pos_7409; neg_3760; neg_5728 | ||
*The values indicate the ratio of differential genes to all background genes in each corresponding pathway (Test/Ref). #The values indicate the ratio of differential proteins to all background proteins in each corresponding pathway.