TABLE 3.
Similarity between the nucleotide sequences of SfV and E. coli prophages
| SfV |
E. coli K-12
|
||||
|---|---|---|---|---|---|
| Nucleotide positions (total no. bp) | Predicted ORFsa | Prophagec (accession no. or refs.) | Homologous nucleotide positions | Predicted ORF(s)a | % identify at nucleotide level |
| 1152-2237 (1085) | (orf-2) | e14 (AE000214) | 7807-8892 | b1149 | 95 |
| 15305-16998 (1693) | (orf-19), orf-20, (orf-21) | 9545-11238 | b1152, b1153, (b1154) | 96 | |
| 20514-19074 (1440) | attP, gtrA, gtrB | 7200-8640 | b1148b b1149b | 82 | |
| 24838-25022 (184) | Between orf-32 and orf-33 | 4687-4871 | (b1142b), (b1143b) | 97 | |
| 25573-27230 (1657) | cl cro, orf-36, (orf-37) | 5556-7213 | b1145, b1146, b1147 | 94 | |
| 17024-16733 (291) | (orf-21) | KpLE1 (AE000324) | 1251-1542 | (b2355) | 92 |
| 24645-21981 (2664) | orf-32, orf-31, orf-30, orf-29, orf-28 | 2994-5658 | b2359, b2360, b2361, b2362, b2363 | 96 | |
| 29880-29041 (839) | (orf-39), orf-40, (orf-41) | 1540-2379 | (b2358), b2357, (b2356) | 95 | |
| 20515-19090 (1425) | attP, gtrA, gtrB | KpLE1 (AE000323) (2, 4) | 7201-8626 | b2350, b2351 | 82 |
| 33679-32464 (1215) | (orf-45), Q | Qin (AE000253) | 130-1345 | (b1560), b1559 | 88 |
a
Parentheses indicate that the region of homology starts within an ORF.
b
e14 ORFs do not correspond to those in SfV.
c
The E. coli K-12 prophages were originally reported by Blattner et al. (7) and have been recently summarized by Hayashi et al. (18) at the following website: http://genome.gen-info.osaka-u.ac.jp/bacteria/o157/sptable3.html.