Table 2:
SNPs suggestive of genome wide significance, of all patients in study population and platinum subset only (denoted by *). Ranked by lowest p-values.
| CHROMOSOME | GENE POSITION | SNP | ALLELE 0 | ALLELE 1 | ALLELE 1 FREQUENCY | BETA | ODDS RATIO | LOWER 95% CI | UPPER 95% CI | P-VALUE | GENE SNP FALLS WITHIN | SNP CATEGORY |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13 | 111502600 | rs1888305 | C | T | 30% | −0.6061 | 0.55 | 0.43 | 0.70 | 7.78E-07 | Intergenic Variant | |
| 13 | 111502515 | rs1888306 | C | T | 30% | −0.6061 | 0.55 | 0.43 | 0.70 | 7.78E-07 | Intergenic Variant | |
| 13 | 111501966 | rs2528783 | A | C | 30% | −0.6061 | 0.55 | 0.43 | 0.70 | 7.78E-07 | Intergenic Variant | |
| 13 | 111503048 | rs2774443 | G | C | 30% | −0.5939 | 0.55 | 0.43 | 0.70 | 1.28E-06 | Intergenic Variant | |
| 4 | 175205838 | rs73875514 | C | G | 10% | 0.9892 | 2.69 | 1.78 | 4.06 | 1.36E-06 | Intronic Variant, Non-Coding Transcript Variant | |
| 13 | 111503205 | rs2528781 | T | C | 30% | −0.5926 | 0.55 | 0.43 | 0.70 | 1.36E-06 | Intergenic Variant | |
| 2 | 175236934 | rs6721193 | G | T | 10% | −0.8696 | 0.42 | 0.29 | 0.60 | 1.91E-06 | Intergenic Variant | |
| 2 | 175231762 | rs4972464 | G | T | 9% | −0.9306 | 0.39 | 0.27 | 0.58 | 1.95E-06 | Intergenic Variant | |
| 13 | 111498586 | rs56276945 | C | CT | 30% | −0.5810 | 0.56 | 0.44 | 0.71 | 1.99E-06 | Intergenic Variant | |
| 11 | 69630892 | rs79605071 | C | T | 9% | −0.9362 | 0.39 | 0.26 | 0.58 | 2.06E-06 | Intergenic Variant | |
| 2 | 175241941 | rs35217812 | CTTTG | C | 10% | −0.8698 | 0.42 | 0.29 | 0.60 | 2.06E-06 | Intergenic Variant | |
| 12 | 131099551 | rs35453516 | G | A | 13% | −0.7717 | 0.46 | 0.33 | 0.64 | 2.44E-06 | ADGRD1 | Intronic Variant |
| 9 | 135237182 | rs4842231 | C | A | 32% | −0.5368 | 0.58 | 0.47 | 0.73 | 2.46E-06 | Intronic Variant, Non-Coding Transcript Variant | |
| 11 | 91588600 | rs11019564 | T | G | 46% | 0.5182 | 1.68 | 1.35 | 2.09 | 2.54E-06 | Intergenic Variant | |
| 14 | 102684707 | rs5811079 | T | TG | 12% | −0.7955 | 0.45 | 0.32 | 0.63 | 2.56E-06 | RCOR1 | Intronic Variant |
| 13 | 111496751 | rs14064098 | C | T | 30% | −0.5747 | 0.56 | 0.44 | 0.72 | 2.72E-06 | Intergenic Variant | |
| 13 | 111496540 | rs9588452 | G | C | 30% | −0.5747 | 0.56 | 0.44 | 0.72 | 2.72E-06 | Intergenic Variant | |
| 11 | 91591591 | rs4753341 | G | A | 46% | 0.5163 | 1.68 | 1.35 | 2.08 | 2.73E-06 | Intergenic Variant | |
| 7 | 101086185 | rs73178512 | G | A | 11% | −0.8079 | 0.45 | 0.32 | 0.63 | 2.74E-06 | TRIM56 | Intronic Variant |
| 2 | 175240338 | rs13383543 | C | T | 10% | −0.8584 | 0.42 | 0.30 | 0.61 | 2.84E-06 | Intergenic Variant | |
| 2 | 175240169 | rs4578824 | C | T | 10% | −0.8584 | 0.42 | 0.30 | 0.61 | 2.84E-06 | Regulatory Region Variant | |
| 2 | 175239543 | rs6758379 | A | G | 10% | −0.8584 | 0.42 | 0.30 | 0.61 | 2.84E-06 | Intergenic Variant | |
| 14 | 102698808 | rs78142501 | G | C | 12% | −0.7927 | 0.45 | 0.32 | 0.63 | 2.87E-06 | RCOR1 | Intronic Variant |
| 7 | 101079139 | rs13232139 | G | A | 10% | −0.8378 | 0.43 | 0.30 | 0.62 | 2.89E-06 | Intergenic Variant | |
| 12 | 131099059 | rs12818313 | A | G | 13% | −0.7667 | 0.46 | 0.34 | 0.64 | 2.92E-06 | ADGRD1 | Intronic Variant |
| 13 | 111500362 | rs2528784 | C | T | 31% | −0.5700 | 0.57 | 0.44 | 0.72 | 2.98E-06 | Intergenic Variant | |
| 2 | 175242487 | rs6741968 | G | T | 10% | −0.8595 | 0.42 | 0.29 | 0.61 | 2.99E-06 | Intergenic Variant | |
| 2 | 175238456 | rs10206628 | G | A | 10% | −0.8545 | 0.43 | 0.30 | 0.61 | 3.15E-06 | Intergenic Variant | |
| 14 | 102747515 | rs76582128 | C | T | 12% | −0.7710 | 0.46 | 0.33 | 0.64 | 3.23E-06 | Intergenic Variant | |
| 11 | 91581660 | rs11019551 | C | T | 45% | 0.5168 | 1.68 | 1.35 | 2.09 | 3.27E-06 | Intergenic Variant | |
| 7 | 101093687 | rs148938283 | G | A | 11% | −0.8028 | 0.45 | 0.32 | 0.63 | 3.33E-06 | TRIM56 | 3_Prime_Utr Variant |
| 12 | 131095433 | rs34982748 | G | A | 13% | −0.7622 | 0.47 | 0.34 | 0.65 | 3.37E-06 | ADGRD1 | Intronic Variant |
| 14 | 102747703 | rs4906256 | G | A | 13% | −0.7414 | 0.48 | 0.35 | 0.65 | 3.39E-06 | Intergenic Variant | |
| 11 | 91579987 | rs12806872 | G | A | 45% | 0.5147 | 1.67 | 1.34 | 2.08 | 3.50E-06 | Intergenic Variant | |
| 11 | 91568295 | rs10830754 | T | C | 45% | 0.5141 | 1.67 | 1.34 | 2.08 | 3.59E-06 | Intergenic Variant | |
| 11 | 91568253 | rs1125760 | T | C | 45% | 0.5141 | 1.67 | 1.34 | 2.08 | 3.59E-06 | Intergenic Variant | |
| 11 | 91571324 | rs11019537 | A | T | 45% | 0.5130 | 1.67 | 1.34 | 2.08 | 3.62E-06 | Intergenic Variant | |
| 14 | 102621535 | rs4906244 | C | T | 12% | −0.7822 | 0.46 | 0.33 | 0.64 | 3.62E-06 | RCOR1 | Intronic Variant |
| 14 | 102606336 | rs149460194 | A | G | 12% | −0.7822 | 0.46 | 0.33 | 0.64 | 3.62E-06 | RCOR1 | Intronic Variant |
| 14 | 102673421 | rs141334183 | C | T | 12% | −0.7822 | 0.46 | 0.33 | 0.64 | 3.62E-06 | RCOR1 | Intronic Variant |
| 14 | 102654727 | rs116256454 | A | T | 12% | −0.7822 | 0.46 | 0.33 | 0.64 | 3.62E-06 | RCOR1 | Intronic Variant |
| 14 | 102642730 | rs115383443 | G | A | 12% | −0.7822 | 0.46 | 0.33 | 0.64 | 3.62E-06 | RCOR1 | Intronic Variant |
| 14 | 102594081 | rs79271450 | C | T | 12% | −0.7822 | 0.46 | 0.33 | 0.64 | 3.62E-06 | RCOR1 | Intronic Variant |
| 14 | 102595834 | rs4900547 | C | G | 12% | −0.7822 | 0.46 | 0.33 | 0.64 | 3.62E-06 | RCOR1 | Intronic Variant |
| 14 | 102601370 | rs60300877 | C | A | 12% | −0.7822 | 0.46 | 0.33 | 0.64 | 3.62E-06 | RCOR1 | Intronic Variant |
| 14 | 102603744 | rs77952079 | C | T | 12% | −0.7822 | 0.46 | 0.33 | 0.64 | 3.62E-06 | RCOR1 | Intronic Variant |
| 11 | 91572935 | rs2514277 | T | C | 45% | 0.5136 | 1.67 | 1.34 | 2.08 | 3.63E-06 | Intergenic Variant | |
| 11 | 91575724 | rs11404746 | CT | C | 45% | 0.5134 | 1.67 | 1.34 | 2.08 | 3.66E-06 | Intergenic Variant | |
| 11 | 91568388 | rs1125761 | A | G | 45% | 0.5135 | 1.67 | 1.34 | 2.08 | 3.68E-06 | Intergenic Variant | |
| 11 | 91567745 | rs1400994 | C | T | 45% | 0.5135 | 1.67 | 1.34 | 2.08 | 3.68E-06 | Intergenic Variant | |
| 11 | 91568007 | rs1980209 | T | C | 45% | 0.5135 | 1.67 | 1.34 | 2.08 | 3.68E-06 | Intergenic Variant | |
| 11 | 91568435 | rs2459880 | G | A | 45% | 0.5135 | 1.67 | 1.34 | 2.08 | 3.68E-06 | Intergenic Variant | |
| 9 | 135249108 | rs14149986 | G | GCCTT | 40% | −0.5312 | 0.59 | 0.47 | 0.74 | 3.69E-06 | Intronic Variant, Non-Coding Transcript Variant | |
| 11 | 91575535 | rs1022362 | T | C | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91575366 | rs1022363 | T | C | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91571975 | rs11019538 | C | T | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91571754 | rs11602247 | G | A | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91577591 | rs14217047 | C | CA | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91574004 | rs1518126 | T | C | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91570818 | rs1518136 | G | C | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91571044 | rs1518137 | A | G | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91571176 | rs1518138 | T | C | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91572469 | rs2459860 | A | T | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91572692 | rs2459861 | G | A | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91577422 | rs2459864 | A | G | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91577350 | rs2459865 | C | T | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91575599 | rs2459868 | A | G | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91575442 | rs2459869 | G | A | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91569493 | rs2459884 | C | A | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91569575 | rs2459885 | A | G | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91569975 | rs2459887 | G | T | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91569304 | rs2514272 | C | T | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91570636 | rs2514273 | G | A | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91571502 | rs2514274 | G | A | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91572553 | rs2514275 | T | A | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91572786 | rs2514276 | T | C | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91573015 | rs2514278 | C | T | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91573044 | rs2514279 | T | G | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91573070 | rs2514280 | A | G | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91573145 | rs2514281 | A | G | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91573857 | rs2514286 | A | G | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91575693 | rs2514289 | G | A | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91576258 | rs2514290 | T | C | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91576389 | rs2514291 | A | G | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91576615 | rs2514292 | G | A | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91577459 | rs2514295 | C | T | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91577698 | rs2514296 | C | T | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91574421 | rs66533610 | AT | A | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91577800 | rs7394706 | C | A | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91578144 | rs7395014 | A | T | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91578141 | rs7396040 | G | C | 45% | 0.5129 | 1.67 | 1.34 | 2.08 | 3.72E-06 | Intergenic Variant | |
| 11 | 91581717 | rs11019552 | G | A | 45% | 0.5145 | 1.67 | 1.34 | 2.08 | 3.73E-06 | Intergenic Variant | |
| 11 | 91581727 | rs11019553 | T | C | 45% | 0.5145 | 1.67 | 1.34 | 2.08 | 3.73E-06 | Intergenic Variant | |
| 11 | 91580672 | rs11529021 | T | A | 45% | 0.5145 | 1.67 | 1.34 | 2.08 | 3.73E-06 | Intergenic Variant | |
| 11 | 91581779 | rs2514266 | A | G | 45% | 0.5145 | 1.67 | 1.34 | 2.08 | 3.73E-06 | Intergenic Variant | |
| 11 | 91581834 | rs2514267 | T | A | 45% | 0.5145 | 1.67 | 1.34 | 2.08 | 3.73E-06 | Intergenic Variant | |
| 11 | 91573395 | rs2514282 | T | G | 45% | 0.5125 | 1.67 | 1.34 | 2.08 | 3.79E-06 | Intergenic Variant | |
| 11 | 91580509 | rs12224291 | G | A | 45% | 0.5125 | 1.67 | 1.34 | 2.08 | 3.79E-06 | Intergenic Variant | |
| 11 | 91580065 | rs12575907 | C | A | 45% | 0.5125 | 1.67 | 1.34 | 2.08 | 3.79E-06 | Intergenic Variant | |
| 11 | 91580174 | rs12576183 | C | T | 45% | 0.5125 | 1.67 | 1.34 | 2.08 | 3.79E-06 | Intergenic Variant | |
| 7 | 101107973 | rs73178519 | C | T | 11% | −0.7908 | 0.45 | 0.32 | 0.64 | 3.90E-06 | Intergenic Variant | |
| 14 | 102712370 | rs150582451 | A | G | 12% | −0.7747 | 0.46 | 0.33 | 0.64 | 3.94E-06 | RCOR1 | Intronic Variant |
| 14 | 102750014 | rs4900553 | T | C | 14% | −0.7290 | 0.48 | 0.35 | 0.66 | 3.96E-06 | Regulatory Region Variant | |
| 14 | 102749655 | rs4906257 | C | A | 14% | −0.7290 | 0.48 | 0.35 | 0.66 | 3.96E-06 | Regulatory Region Variant | |
| 14 | 102750064 | rs61152564 | G | T | 14% | −0.7290 | 0.48 | 0.35 | 0.66 | 3.96E-06 | Regulatory Region Variant | |
| 14 | 102750066 | rs61281821 | A | G | 14% | −0.7290 | 0.48 | 0.35 | 0.66 | 3.96E-06 | Regulatory Region Variant | |
| 11 | 91577063 | rs14633681 | T | C | 45% | 0.5118 | 1.67 | 1.34 | 2.08 | 3.97E-06 | Intergenic Variant | |
| 2 | 175231641 | rs4972463 | T | C | 9% | −0.8949 | 0.41 | 0.28 | 0.60 | 4.25E-06 | Intergenic Variant | |
| 11 | 91597513 | rs2379023 | G | A | 47% | 0.5094 | 1.66 | 1.34 | 2.07 | 4.38E-06 | Intergenic Variant | |
| 14 | 102636744 | rs146580675 | C | T | 12% | −0.7752 | 0.46 | 0.33 | 0.64 | 4.40E-06 | RCOR1 | Intronic Variant |
| 21 | 36512938 | rs9975228 | G | A | 21% | −0.6279 | 0.53 | 0.41 | 0.70 | 4.43E-06 | CLDN14 | Intronic Variant |
| 11 | 91583335 | rs11019557 | A | G | 46% | 0.5127 | 1.67 | 1.34 | 2.08 | 4.45E-06 | Intergenic Variant | |
| 7 | 101080613 | rs28651567 | C | T | 12% | −0.7686 | 0.46 | 0.33 | 0.65 | 4.55E-06 | TRIM56 | Upstream Gene Variant |
| 7 | 101081171 | rs7786422 | C | T | 12% | −0.7686 | 0.46 | 0.33 | 0.65 | 4.55E-06 | TRIM56 | Upstream Gene Variant |
| 14 | 102748897 | rs4900551 | T | C | 14% | −0.7248 | 0.48 | 0.35 | 0.66 | 4.61E-06 | Intergenic Variant | |
| 14 | 102750750 | rs4906258 | T | G | 12% | −0.7706 | 0.46 | 0.33 | 0.64 | 4.65E-06 | Intergenic Variant | |
| 14 | 102697644 | rs139019675 | T | TC | 12% | −0.7583 | 0.47 | 0.34 | 0.65 | 4.65E-06 | RCOR1 | Intronic Variant |
| 18 | 9309384 | rs54697684 | C | CA | 4% | −1.2974 | 0.27 | 0.15 | 0.49 | 4.69E-06 | Downstream Gene Variant | |
| 7 | 101070694 | rs73178503 | C | A | 11% | −0.7758 | 0.46 | 0.33 | 0.65 | 4.77E-06 | Intergenic Variant | |
| 14 | 102726999 | rs75017083 | C | T | 12% | −0.7667 | 0.46 | 0.33 | 0.65 | 4.80E-06 | RCOR1 | 3_Prime_Utr Variant |
| 7 | 101051857 | rs73168398 | G | A | 11% | −0.7854 | 0.46 | 0.32 | 0.64 | 4.93E-06 | MUC17 | Missense Variant |
| 14 | 102612352 | rs115494013 | C | T | 12% | −0.7646 | 0.47 | 0.33 | 0.65 | 4.93E-06 | RCOR1 | Intronic Variant |
| 14 | 102639870 | rs114846369 | C | T | 12% | −0.7646 | 0.47 | 0.33 | 0.65 | 4.93E-06 | RCOR1 | Intronic Variant |
| 14 | 102601078 | rs149821483 | A | G | 12% | −0.7646 | 0.47 | 0.33 | 0.65 | 4.93E-06 | RCOR1 | Intronic Variant |
| 14 | 102643963 | rs114213158 | T | A | 12% | −0.7646 | 0.47 | 0.33 | 0.65 | 4.93E-06 | RCOR1 | Intronic Variant |
| 14 | 102644025 | rs74810174 | A | G | 12% | −0.7646 | 0.47 | 0.33 | 0.65 | 4.93E-06 | RCOR1 | Intronic Variant |
| 14 | 102650261 | rs4900548 | C | T | 12% | −0.7646 | 0.47 | 0.33 | 0.65 | 4.93E-06 | RCOR1 | Intronic Variant |
| 14 | 102599305 | rs78475547 | A | G | 12% | −0.7646 | 0.47 | 0.33 | 0.65 | 4.93E-06 | RCOR1 | Intronic Variant |
| 14 | 102657945 | rs116780532 | G | A | 12% | −0.7646 | 0.47 | 0.33 | 0.65 | 4.93E-06 | RCOR1 | Intronic Variant |
| 14 | 102671861 | rs4633650 | C | G | 12% | −0.7646 | 0.47 | 0.33 | 0.65 | 4.93E-06 | RCOR1 | Intronic Variant |
| 7 | 101072593 | rs9792109 | G | A | 10% | −0.7930 | 0.45 | 0.32 | 0.64 | 4.98E-06 | Intergenic Variant | |
| 7 | 101076427 | rs11566678 | C | A | 11% | −0.7749 | 0.46 | 0.33 | 0.65 | 5.05E-06 | Intergenic Variant | |
| 11 | 91578837 | rs67929165 | T | A | 45% | 0.5059 | 1.66 | 1.33 | 2.07 | 5.14E-06 | Intergenic Variant | |
| 18 | 78140225 | rs12965943 | T | G | 24% | 0.6023 | 1.83 | 1.40 | 2.38 | 5.15E-06 | Non-Coding Transcript Exon Variant | |
| 11 | 91580577 | rs11525329 | A | C | 45% | 0.5055 | 1.66 | 1.33 | 2.07 | 5.23E-06 | Intergenic Variant | |
| 11 | 91580591 | rs12225550 | C | G | 45% | 0.5055 | 1.66 | 1.33 | 2.07 | 5.23E-06 | Intergenic Variant | |
| 11 | 91580339 | rs12577086 | A | G | 45% | 0.5055 | 1.66 | 1.33 | 2.07 | 5.23E-06 | Intergenic Variant | |
| 11 | 91580292 | rs12788357 | G | A | 45% | 0.5055 | 1.66 | 1.33 | 2.07 | 5.23E-06 | Intergenic Variant | |
| 11 | 91580440 | rs15121244 | CA | C | 45% | 0.5055 | 1.66 | 1.33 | 2.07 | 5.23E-06 | Intergenic Variant | |
| 14 | 102603675 | rs116792245 | C | T | 12% | −0.7699 | 0.46 | 0.33 | 0.65 | 5.24E-06 | RCOR1 | Intronic Variant |
| 12 | 131092111 | rs34255965 | G | A | 13% | −0.7452 | 0.47 | 0.34 | 0.66 | 5.31E-06 | ADGRD1 | Intronic Variant |
| 12 | 131092085 | rs34507968 | A | G | 13% | −0.7452 | 0.47 | 0.34 | 0.66 | 5.31E-06 | ADGRD1 | Intronic Variant |
| 12 | 131093066 | rs67818722 | C | T | 13% | −0.7452 | 0.47 | 0.34 | 0.66 | 5.31E-06 | ADGRD1 | Intronic Variant |
| 14 | 102749516 | rs4900552 | C | T | 12% | −0.7658 | 0.46 | 0.33 | 0.65 | 5.50E-06 | Regulatory Region Variant | |
| 11 | 91578783 | rs74535422 | G | T | 45% | 0.5032 | 1.65 | 1.33 | 2.06 | 5.77E-06 | Intergenic Variant | |
| 12 | 131089548 | rs34096738 | C | T | 13% | −0.7348 | 0.48 | 0.35 | 0.66 | 5.83E-06 | ADGRD1 | Intronic Variant |
| 12 | 131089230 | rs61939673 | G | A | 13% | −0.7348 | 0.48 | 0.35 | 0.66 | 5.83E-06 | ADGRD1 | Intronic Variant |
| 11 | 91578462 | rs61915465 | T | C | 45% | 0.5034 | 1.65 | 1.33 | 2.06 | 5.89E-06 | Intergenic Variant | |
| 11 | 91592505 | rs3899377 | A | G | 47% | 0.5027 | 1.65 | 1.33 | 2.06 | 6.01E-06 | Intergenic Variant | |
| 14 | 102701751 | rs77380526 | G | A | 12% | −0.7777 | 0.46 | 0.33 | 0.64 | 6.13E-06 | RCOR1 | Intronic Variant |
| 11 | 91570564 | rs10765485 | A | G | 46% | 0.5039 | 1.66 | 1.33 | 2.06 | 6.15E-06 | Intergenic Variant | |
| 14 | 102591298 | rs4906230 | C | T | 12% | −0.7497 | 0.47 | 0.34 | 0.66 | 6.16E-06 | RCOR1 | Upstream Gene Variant |
| 14 | 102591730 | rs78711800 | G | C | 12% | −0.7497 | 0.47 | 0.34 | 0.66 | 6.16E-06 | RCOR1 | Upstream Gene Variant |
| 14 | 102591979 | rs8009380 | G | C | 12% | −0.7497 | 0.47 | 0.34 | 0.66 | 6.16E-06 | RCOR1 | Upstream Gene Variant |
| 11 | 91580070 | rs2397699 | A | G | 46% | 0.5036 | 1.65 | 1.33 | 2.06 | 6.24E-06 | Intergenic Variant | |
| 11 | 91590070 | rs34139243 | A | AT | 47% | 0.5015 | 1.65 | 1.33 | 2.06 | 6.26E-06 | Intergenic Variant | |
| 11 | 91578809 | rs77373275 | A | T | 45% | 0.5010 | 1.65 | 1.33 | 2.06 | 6.36E-06 | Intergenic Variant | |
| 7 | 101064828 | rs73170203 | C | T | 11% | −0.7634 | 0.47 | 0.33 | 0.65 | 6.38E-06 | Intergenic Variant | |
| 11 | 91578822 | rs77037457 | T | C | 45% | 0.5003 | 1.65 | 1.32 | 2.05 | 6.54E-06 | Intergenic Variant | |
| 2 | 131806368 | rs34034097 | A | AT | 10% | 0.8408 | 2.32 | 1.59 | 3.39 | 6.67E-06 | CDRT15P3 | Upstream Gene Variant |
| 11 | 91580129 | rs71062035 | C | CA | 45% | 0.4999 | 1.65 | 1.32 | 2.05 | 6.72E-06 | Intergenic Variant | |
| 18 | 78141055 | rs8088204 | C | T | 24% | 0.5954 | 1.81 | 1.39 | 2.36 | 6.96E-06 | Downstream Gene Variant | |
| 9 | 135247961 | rs2298246 | G | A | 35% | −0.5153 | 0.60 | 0.48 | 0.75 | 7.05E-06 | Intronic Variant, Non-Coding Transcript Variant | |
| 7 | 101054606 | rs35802441 | A | T | 11% | −0.7476 | 0.47 | 0.34 | 0.66 | 7.31E-06 | MUC17 | Intronic Variant |
| 14 | 102735538 | rs74084153 | A | G | 14% | −0.7080 | 0.49 | 0.36 | 0.67 | 7.36E-06 | RCOR1 | Downstream Gene Variant |
| 14 | 102740979 | rs60903095 | C | T | 12% | −0.7620 | 0.47 | 0.33 | 0.65 | 7.37E-06 | Intergenic Variant | |
| 18 | 78142067 | rs55634452 | A | G | 24% | 0.5889 | 1.80 | 1.39 | 2.34 | 7.37E-06 | Downstream Gene Variant | |
| 18 | 78140770 | rs924889 | A | G | 24% | 0.5889 | 1.80 | 1.39 | 2.34 | 7.37E-06 | Non-Coding Transcript Exon Variant | |
| 21 | 28231304 | rs429864 | A | G | 21% | −0.6057 | 0.55 | 0.42 | 0.71 | 7.39E-06 | LINC01695 | Upstream Gene Variant |
| 5 | 25035490 | rs72755809 | C | T | 28% | 0.5559 | 1.74 | 1.36 | 2.23 | 7.68E-06 | Intergenic Variant | |
| 18 | 9111648 | rs141232585 | C | T | 3% | −1.4334 | 0.24 | 0.12 | 0.46 | 7.82E-06 | NDUFV2 | Intronic Variant |
| 14 | 102708876 | rs80031694 | G | C | 12% | −0.7512 | 0.47 | 0.34 | 0.66 | 7.83E-06 | RCOR1 | Intronic Variant |
| 11 | 91594398 | rs10830757 | T | C | 47% | 0.4973 | 1.64 | 1.32 | 2.05 | 7.89E-06 | Intergenic Variant | |
| 7 | 5823017 | rs2287589 | G | A | 23% | −0.5631 | 0.57 | 0.44 | 0.73 | 7.99E-06 | ZNF815P | Upstream Gene Variant |
| 11 | 91572654 | rs11019539 | T | C | 46% | 0.4990 | 1.65 | 1.32 | 2.05 | 8.08E-06 | Intergenic Variant | |
| 11 | 91581507 | rs13952991 | T | C | 46% | 0.5004 | 1.65 | 1.32 | 2.06 | 8.13E-06 | Intergenic Variant | |
| 14 | 102743934 | rs14466306 | A | G | 14% | −0.7057 | 0.49 | 0.36 | 0.67 | 8.19E-06 | Intergenic Variant | |
| 18 | 78152243 | rs35084996 | T | A | 24% | 0.5800 | 1.79 | 1.38 | 2.31 | 8.21E-06 | Intergenic Variant | |
| 18 | 78140192 | rs12957925 | G | A | 24% | 0.5870 | 1.80 | 1.38 | 2.34 | 8.36E-06 | Non-Coding Transcript Exon Variant | |
| 12 | 131083583 | rs12810812 | C | T | 12% | −0.7373 | 0.48 | 0.34 | 0.66 | 8.36E-06 | ADGRD1 | Intronic Variant |
| 11 | 91590106 | rs3908111 | G | T | 47% | 0.4955 | 1.64 | 1.32 | 2.05 | 8.40E-06 | Intergenic Variant | |
| 20 | 2638548 | rs36029032 | CAGA | C | 9% | 0.8868 | 2.43 | 1.62 | 3.65 | 8.48E-06 | TMC2 | Intronic Variant |
| 18 | 78139991 | rs36084769 | C | T | 24% | 0.5909 | 1.81 | 1.39 | 2.35 | 8.49E-06 | Non-Coding Transcript Exon Variant | |
| 14 | 102747239 | rs4906255 | C | T | 12% | −0.7499 | 0.47 | 0.34 | 0.66 | 8.59E-06 | Intergenic Variant | |
| 11 | 91602319 | rs35107699 | T | TA | 47% | 0.4968 | 1.64 | 1.32 | 2.05 | 8.68E-06 | Intergenic Variant | |
| 21 | 28248050 | rs118736 | G | A | 21% | −0.5975 | 0.55 | 0.42 | 0.72 | 8.83E-06 | Intergenic Variant | |
| 21 | 28247396 | rs118737 | T | C | 21% | −0.5975 | 0.55 | 0.42 | 0.72 | 8.83E-06 | Intergenic Variant | |
| 21 | 28247784 | rs3053319 | A | AGTT | 21% | −0.5975 | 0.55 | 0.42 | 0.72 | 8.83E-06 | Intergenic Variant | |
| 21 | 28249473 | rs391427 | T | C | 21% | −0.5975 | 0.55 | 0.42 | 0.72 | 8.83E-06 | Intergenic Variant | |
| 1 | 91762933 | rs11334581 | TC | T | 43% | 0.4817 | 1.62 | 1.31 | 2.01 | 8.92E-06 | TGFBR3 | Intronic Variant |
| 14 | 102750955 | rs60714848 | C | T | 12% | −0.7357 | 0.48 | 0.35 | 0.66 | 8.95E-06 | Intergenic Variant | |
| 14 | 102728661 | rs8006699 | A | G | 18% | −0.6223 | 0.54 | 0.41 | 0.71 | 9.05E-06 | RCOR1 | 3_Prime_Utr Variant |
| 20 | 2616116 | rs6050622 | G | A | 10% | 0.8401 | 2.32 | 1.58 | 3.40 | 9.15E-06 | TMC2 | Intronic Variant |
| 18 | 78153505 | rs35322659 | C | T | 23% | 0.5942 | 1.81 | 1.39 | 2.37 | 9.25E-06 | Intergenic Variant | |
| 18 | 63114979 | rs2086466 | G | A | 37% | −0.5357 | 0.59 | 0.46 | 0.74 | 9.36E-06 | Intergenic Variant | |
| 18 | 78147694 | rs7237276 | C | T | 24% | 0.5704 | 1.77 | 1.37 | 2.29 | 9.63E-06 | Intergenic Variant | |
| 14 | 102724506 | rs59457020 | A | G | 13% | −0.7282 | 0.48 | 0.35 | 0.67 | 9.65E-06 | RCOR1 | Intronic Variant |
| 18 | 78140912 | rs924887 | G | C | 24% | 0.5793 | 1.78 | 1.38 | 2.32 | 9.71E-06 | Downstream Gene Variant | |
| 18 | 78140840 | rs924888 | G | A | 24% | 0.5793 | 1.78 | 1.38 | 2.32 | 9.71E-06 | Non-Coding Transcript Exon Variant | |
| 11 | 91561007 | rs11019527 | C | T | 46% | 0.4954 | 1.64 | 1.32 | 2.05 | 9.73E-06 | Intergenic Variant | |
| 20 | 2619294 | rs1028442 | C | A | 9% | 0.8941 | 2.45 | 1.62 | 3.69 | 9.76E-06 | TMC2 | Intronic Variant |
| 20 | 2617759 | rs13040075 | G | A | 9% | 0.8941 | 2.45 | 1.62 | 3.69 | 9.76E-06 | TMC2 | Intronic Variant |
| 18 | 78151987 | rs35648462 | G | A | 24% | 0.5779 | 1.78 | 1.37 | 2.31 | 9.93E-06 | Intergenic Variant | |
| 21 | 28229634 | rs452763 | G | C | 21% | −0.5943 | 0.55 | 0.42 | 0.72 | 9.94E-06 | LINC01695 | Upstream Gene Variant |
| 12 | 131083684 | rs12811004 | C | T | 12% | −0.7300 | 0.48 | 0.35 | 0.67 | 9.96E-06 | ADGRD1 | Intronic Variant |
|
| ||||||||||||
| 17* | 68284941 | rs11869470 | C | T | 40% | −1.1268 | 0.32 | 0.21 | 0.50 | 1.63E-07 | SLC16A6 | Intronic Variant |
| 17* | 68287047 | rs7212016 | G | A | 40% | −1.1268 | 0.32 | 0.21 | 0.50 | 1.63E-07 | SLC16A6 | Intronic Variant |
| 17* | 68286010 | rs2041129 | T | C | 39% | −1.0955 | 0.33 | 0.22 | 0.52 | 4.60E-07 | SLC16A6 | Intronic Variant |
| 17* | 68286614 | rs6501351 | C | T | 39% | −1.0955 | 0.33 | 0.22 | 0.52 | 4.60E-07 | SLC16A6 | Intronic Variant |
| 17* | 68289252 | rs2190760 | C | G | 39% | −1.0955 | 0.33 | 0.22 | 0.52 | 4.60E-07 | SLC16A6 | Intronic Variant |
| 6* | 9767853 | rs2327201 | G | C | 27% | −1.0589 | 0.35 | 0.23 | 0.53 | 1.26E-06 | OFCC1 | Intronic Variant, Non-Coding Transcript Variant |
| 6* | 9767851 | rs201192390 | TA | T | 27% | −1.0589 | 0.35 | 0.23 | 0.53 | 1.26E-06 | OFCC1 | Intronic Variant, Non-Coding Transcript Variant |
| 3* | 196824767 | rs6583179 | C | G | 40% | 0.9525 | 2.59 | 1.73 | 3.89 | 1.78E-06 | PAK2 | Intronic Variant |
| 8* | 143470548 | rs76578854 | G | A | 9% | −1.6555 | 0.19 | 0.09 | 0.39 | 2.65E-06 | ZC3H3 | Intronic Variant |
| 6* | 9768138 | rs2092093 | C | T | 27% | −1.0273 | 0.36 | 0.23 | 0.55 | 3.12E-06 | OFCC1 | Intronic Variant, Non-Coding Transcript Variant |
| 3* | 196819658 | rs10446497 | T | G | 39% | 0.9391 | 2.56 | 1.70 | 3.85 | 3.32E-06 | PAK2 | Intronic Variant |
| 1* | 94652759 | rs6660609 | G | A | 9% | 1.8099 | 6.11 | 2.61 | 14.29 | 3.61E-06 | KATNBL1P2 | Upstream Gene Variant |
| 7* | 110283153 | rs67579037 | C | T | 19% | −1.2177 | 0.30 | 0.18 | 0.50 | 3.90E-06 | Intronic Variant, Non-Coding Transcript Variant | |
| 7* | 27300282 | rs17438159 | A | G | 15% | −1.2604 | 0.28 | 0.17 | 0.48 | 4.05E-06 | Regulatory Region Variant | |
| 7* | 110281830 | rs66805126 | G | A | 19% | −1.2062 | 0.30 | 0.18 | 0.50 | 4.68E-06 | Intronic Variant, Non-Coding Transcript Variant | |
| 7* | 110271279 | rs12671447 | T | A | 19% | −1.1912 | 0.30 | 0.18 | 0.51 | 6.21E-06 | Intronic Variant, Non-Coding Transcript Variant | |
| 7* | 110271638 | rs10487317 | G | A | 19% | −1.1853 | 0.31 | 0.18 | 0.51 | 6.62E-06 | Intronic Variant, Non-Coding Transcript Variant | |
| 1* | 56330183 | rs3005913 | A | G | 27% | −0.9843 | 0.37 | 0.24 | 0.58 | 7.03E-06 | Intronic Variant, Non-Coding Transcript Variant | |
| 17* | 68292900 | rs3760269 | G | T | 41% | −0.9474 | 0.39 | 0.26 | 0.59 | 7.09E-06 | SLC16A6 | Upstream Gene Variant |
| 17* | 68290996 | rs1319198 | C | A | 40% | −0.9617 | 0.38 | 0.25 | 0.59 | 7.82E-06 | SLC16A6 | Intronic Variant |
| 11* | 134699208 | rs12277397 | G | T | 12% | 1.4166 | 4.12 | 2.13 | 7.98 | 7.90E-06 | Intronic Variant, Non-Coding Transcript Variant | |
| 8* | 143452182 | rs72691428 | G | A | 9% | −1.5735 | 0.21 | 0.10 | 0.42 | 7.93E-06 | ZC3H3 | Intronic Variant |
| 11* | 134701041 | rs11223958 | C | T | 11% | 1.4161 | 4.12 | 2.13 | 7.98 | 8.27E-06 | Intronic Variant, Non-Coding Transcript Variant | |
| 7* | 110282523 | rs67805305 | G | C | 18% | −1.1991 | 0.30 | 0.18 | 0.51 | 8.46E-06 | Intronic Variant, Non-Coding Transcript Variant | |
| 11* | 134724368 | rs73600945 | T | C | 11% | 1.4362 | 4.20 | 2.16 | 8.19 | 8.62E-06 | Intergenic Variant | |
| 17* | 68290916 | rs5821650 | C | CCTAA | 41% | −0.9403 | 0.39 | 0.26 | 0.59 | 8.79E-06 | SLC16A6 | Intronic Variant |
| 8* | 143451955 | rs72691427 | G | A | 9% | −1.5865 | 0.20 | 0.10 | 0.42 | 9.34E-06 | ZC3H3 | Intronic Variant |