TABLE 2.
OVO binding sequences
| Putative binding site | Method | Score (−47.5 to 13.6) |
% of maximum | Reference |
|---|---|---|---|---|
| ACTGTTACG | SELEX | 10.0 | 94.19 | Lee and Garfinkel (2000) |
| ACTGTTACT | SELEX | 11.1 | 96.01 | Lee and Garfinkel (2000) |
| ACGGTTACA | SELEX | 11.8 | 97.12 | Lee and Garfinkel (2000) |
| ACAGTTGCT | SELEX | 10.0 | 94.22 | Lee and Garfinkel (2000) |
| ACAGTTACA | SELEX | 12.8 | 98.75 | Lee and Garfinkel (2000) |
| TCTGTTAAG | SELEX | 4.6 | 85.31 | Lee and Garfinkel (2000) |
| TCGGTTGCT | SELEX | 7.2 | 89.64 | Lee and Garfinkel (2000) |
| TCGGTTTCT | SELEX | 6.1 | 87.73 | Lee and Garfinkel (2000) |
| GCTGTTCGT | SELEX | 4.8 | 85.74 | Lee and Garfinkel (2000) |
| TCCGTTACT | SELEX | 10.8 | 95.51 | Lee and Garfinkel (2000) |
| GCCGTTAGA | SELEX | 9.7 | 93.68 | Lee and Garfinkel (2000) |
| CCGGTTACG | SELEX | 7.1 | 89.46 | Lee and Garfinkel (2000) |
| GCTGTTAAT | SELEX | 6.1 | 87.77 | Lee and Garfinkel (2000) |
| TCGGTTTCT | SELEX | 6.1 | 87.73 | Lee and Garfinkel (2000) |
| ACAGTTATA | SELEX | 8.8 | 92.15 | Lee and Garfinkel (2000) |
| ACAGTTAGT | SELEX | 9.4 | 93.19 | Lee and Garfinkel (2000) |
| GCAGTTACT | SELEX | 10.5 | 94.9 | Lee and Garfinkel (2000) |
| CCCGTTACG | SELEX | 8.9 | 92.34 | Lee and Garfinkel (2000) |
| ACTGTTTCT | SELEX | 8.1 | 91.11 | Lee and Garfinkel (2000) |
| ACTGTTCGA | SELEX | 7.2 | 89.59 | Lee and Garfinkel (2000) |
| ACTGTTTCA | SELEX | 9.1 | 92.65 | Lee and Garfinkel (2000) |
| ACAGTTACA | Gel shift, footprint | 12.8 | 98.75 | Lu et al. (1998) |
| GCCGTTAAA | Gel shift, footprint | 8.5 | 91.77 | Lu et al. (1998) |
| ACAGTAACA | Gel shift, footprint | 9.0 | 92.54 | Lu et al. (1998) |
| ACAGTTAGA | Gel shift, footprint | 10.3 | 94.74 | Lu et al. (1998) |
| TTCGTTGCC | Gel shift, footprint | 3.5 | 83.59 | Lu et al. (1998) |
| ACCGTTACA | Gel shift, footprint | 13.6 | 100 | Lu et al. (1998) |
| CCTGTTATC | Gel shift, footprint | 3.3 | 83.29 | Lu et al. (1998) |
| GCCGTAGTA | Gel shift, footprint | 2.5 | 81.89 | Lu et al. (1998) |
| AACGTTACA | Gel shift | 8.6 | 91.94 | This study |
| ACCGATACA | Gel shift | 9.1 | 92.73 | This study |
| ACCGTGACA | Gel shift | 8.8 | 92.17 | This study |
| ACCGTTCCA | Gel shift | 11.2 | 96.06 | This study |
| ACCGTTACT | Gel shift | 12.6 | 98.46 | This study |
| TTAGTTGCC | Gel shift | 2.8 | 82.34 | This study |
| ACCGTTACT | Gel shift | 12.6 | 98.46 | This study |
| GCAGTTAAA | Gel shift | 7.8 | 90.52 | This study |
| ACAGTAACA | Gel shift | 9.0 | 92.54 | This study |
| TTAGTTGCC | Gel shift | 2.8 | 82.34 | This study |
| ACAGTTACA | Gel shift | 12.8 | 98.75 | This study |
| ACAGTTAGA | Gel shift | 10.3 | 94.74 | This study |
| AACGTTACA | Gel shift | 8.6 | 91.94 | This study |
| ACCGATACA | Gel shift | 9.1 | 92.73 | This study |
| ACCGTTCCA | Gel shift | 11.2 | 96.06 | This study |