Table 2.
Primers used for allele-specific and SSCP genotyping
Primera | Description | Sequence (5′ to 3′)b |
---|---|---|
Exon 3: g.7,700_7,702dupGAC polymorphism (p.71Ddup) | ||
hF2–44 | wild-type forward | AGA AAT GTC CTG TTT CAG TGc CT |
hF2–45 | 71Ddup forward | gcc ccg ggg gCA Aga AAA TGT CCT GTT TCA GTc ACG |
hF2–46r | common reverse | TTA TGC AGG AAG TTT GG |
Exon 4: g.10,951delG polymorphism (p.V113fs) | ||
hF2–83 | common forward | TTC AAG ACA ACT GTC CTT A |
hF2–49r | common reverse | AAC CAT AAC TGC GTC AAA G |
Exon 5: g.13,732C > T polymorphism (p.S195L) | ||
hF2–50 | wild-type forward | ggg ggg ggg ggc CCT caT GAT TGG AAT GGG AAC cTC |
hF2–79 | S195L forward | CTG GTG ATT GGt ATG GGA AAg TT |
hF2–52r | common reverse | TGA GCA GCA TTC TTA CTC AG |
Exon 8: g.22,060T > G polymorphism (p.N413 K) | ||
hF2–59 | common forward | TTG TGT AGC CTG CCC TCA GA |
hF2–60r | wild-type reverse | ccc ccc ccc cgt GGT CAA TTC TTT TgT CA |
hF2–61r | N413 K reverse | CAc GTC AAT TCT TTT TaC C |
Exon 9: g.23,238C > T polymorphism (p.Q472X) | ||
hF2–42 | FMO2*1 forward | CGG ACC CTG CAA CTC CTt TC |
hF2–20 | FMO2*2 forward | caa gct tat aTA TTT CGG ACC CTG CAA gTC CTA TTc |
hF2–18r | Common reverse | caa agc TTA TGC TGA CTA GGc |
Lower case ‘r’ indicates a reverse primer, while absence of an ‘r’ indicates a forward primer.
Lower case indicates intentional sequence mismatches; bold/underlining indicates the polymorphism discriminating nucleotide.
These primers have been described previously [16].