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. 2005 Dec 14;6:301. doi: 10.1186/1471-2105-6-301

Figure 7.

Figure 7

Molecular mechanics/Poisson Boltzmann surface area energy for simulations NATIVE (black), F1 (red), F3 (green), F4 (blue), F7 (yellow) versus RMSD from native structure. In the upper plot no averaging is applied, in the lower plot a moving average is applied over a window of 50 molecular dynamics snapshots.