SSPs	Small Secreted Proteins
CWDEs	Cell Wall-Degrading Enzymes
CAZymes	Carbohydrate-Active Enzymes
GH	Glycosyl Hydrolase
Cel1/Cbh1	Cellobiohydrolase 1
PAMPs	Pathogen-Associated Molecular Patterns
PRRs	Pattern Recognition Receptors
PTI	PAMP-Triggered Immunity
ETS	Effector-Triggered Susceptibility
ETI	Effector-Triggered Immunity
R proteins	Resistance Proteins
HR	Hypersensitive Response
LysM	Lysin Motif
CKs	Cytokinins
CpIPT-LOG	Bifunctional Isopentenyltransferase–LONELY GUY enzyme
tRNA	Transfer RNA
CptRNA-IPT	tRNA Isopentenyltransferase
IAA	Indole-3-Acetic Acid
GA	Gibberellic Acid
SA	Salicylic Acid
JA	Jasmonic Acid
ROS	Reactive Oxygen Species
NADPH	Nicotinamide Adenine Dinucleotide Phosphate
EAS	Ergot Alkaloid Synthesis
kb	Kilobase
DMATS	Dimethylallyltryptophan Synthase
dmaW	Dimethylallyltryptophan Synthase gene
DMAT	4-Dimethylallyl-L-Tryptophan
NRPSs	Non-Ribosomal Peptide Synthetases
LpsA	Lysergyl Peptide Synthetase A
LpsB	Lysergyl Peptide Synthetase B
RNA-seq	RNA Sequencing
Dual RNA-seq	Dual RNA Sequencing
Multi-omics	Multi-omics Approaches