TABLE 1.
Timeline of activities in the bacteriophage course
| Day | Main activities | Key procedures | Expected outcome |
|---|---|---|---|
| Day 1 | Introduction and sample collection | Instructions about sample collection and biosafety Collection of environmental samples |
Samples ready for processing |
| Day 2 | Laboratory introduction and sample preparation | Biosafety training Introduction to the equipment Introduction to bioinformatic analysis (genome assembly, genome assembly, and available tools) Sample centrifugation and filtration Preparation of enrichment cultures |
Enrichment cultures prepared and incubated (overnight) Bioinformatic analysis |
| Day 3 | Phage detection (initial screening) | Processing enrichment cultures (chloroform treatment) Preparation of double agar plates Spotting enrichment cultures Spotting filtered samples |
Plates incubated for phage detection (lysis plaques expected next day) Bioinformatic analysis |
| Day 4 | Analysis and experimental expansion | Detection of lysis zones Preparation of phage stocks Preparation of new plates for phage titration and host range assays |
New plates incubated (titration and host range results expected next day) Bioinformatic analysis |
| Day 5 | Final analysis and presentation of the results | Phage titration (PFU/mL) Host range evaluation Genomics discussion Group presentations |
Interpretation of results and course conclusion |