TABLE 3.

Carbohydrate-active enzymes and ABC transporters in T. maritima that were differentially regulated during the transition from mid-log to early stationary phase in coculture with M. jannaschii^a

Gene(s)	Annotation	Fold change
TM0024	Laminarinase	3.0
TM0030-31	β-Glucan ABC transporter subunits	2.1, 3.4
TM0070	Xylanase	2.2
TM0071	Xylan ABC transporter subunit	7.2
TM0114	Putative monosaccharide ABC transporter subunit	2.5
TM0123	Metal ABC transporter subunit	2.4
TM0300-302	Unknown ABC transporter subunits	3.3, 2.1, 2.0
TM0310	Galactosidase	2.2
TM0418	Maltose ABC transporter subunit	2.2
TM0430-432	Putative pectin ABC transporter subunits	3.1, 2.5, 4.4
TM0433	Pectate lyase	2.4
TM0533	Unknown ABC transporter	−2.1
TM0624	F1 glycosyltransferase	2.4
TM0627	F1 glycosyltransferase	−2.0
TM0633	Predicted GH73	2.6
TM0752	Glucuronidase	2.3
TM0767	Maltosyltransferase	−3.3
TM0958	Ribose ABC transporter subunit	2.7
TM1064	Rhamnose ABC transporter subunit	2.0
TM1068	Glururonidase	1.9
TM1199	Lactose ABC transporter subunit	2.0
TM1223	β-Glucan ABC transporter subunit	2.3
TM1227	Mannase	1.9
TM1231	Mannosidase	2.9
TM1232-35	Unknown ABC transporter subunits	3.4, 2.1, 2.7, 5.3
TM1524	Endoglucanase	2.1
TM1525	Endoglucanase	1.8
TM1650	Amylase	2.1
TM1746-49	Mannan ABC transporter subunits	2.1, 2.9, 2.4, 2.1
TM1751	Endoglucanase	2.0
TM1752	Endomannase	2.0
TM1834	Glucosidase	NCb
TM1835	Cyclomaltodextrinase	−1.9
TM1836	Maltose ABC transporter subunit	−2.3
TM1839	Maltose ABC transporter subunit	−2.8
TM1840	Amylase	1.9
TM1848	Cellobiose phosphorylase	2.1
TM1851	Mannosidase	3.0
TM1853-55	Putative sugar ABC transporter subunits	2.9, 5.7, 22.6

^aNo statistically significant fold changes were noted for the same transition in the pure culture. Annotations are based from the work of Conners et al. (9), with the exception of TM0624, and TM0627, which are annotated from the COG database (44).

^bNC, no change.