TABLE 1.
Coordinates and characteristics of phage and the largest island regions
| Start | End | Size | Recombinase | RNA | Contents |
|---|---|---|---|---|---|
| 185492 | 211201 | 25,710 bp | Insecticidal toxin subunits; TcaA has internal deletion; phage ORFs between toxin genes; hypotheticals | ||
| 262478 | 310975 | 48,498 bp | IS cluster at 3′ end | IcmF-like fragments and ORFs similar to OI no. 7 of EDL933; Rhs; regulator; ribokinase | |
| 581694 | 641978 | 60,285 bp | Type III secretion system (one ORF disrupted); hmu (hemin uptake); Tellurite resistance; chaperone and usher; putative adhesin | ||
| ≈834807 | ≈842229 | ≈7.4 kbp | Phage remnant; no flanking repeats; integrase; no other phage-like features | ||
| 1258841 | 1313395 | 54,555 bp | IS100 | Sugar transport; UreA; putative enzymes; hypotheticals | |
| ≈1362250 | ≈1368074 | ≈5.8 kbp | Phage remnant; no flanking repeats; integrase disrupted by a transposase; no other phage-like features | ||
| 1679400 | 1733523 | 54,124 bp | tRNA-Arg | yfu Fe uptake; fimbriae; VgrG; Pseudomonas-like hypotheticals; IS100 | |
| 2410398 | 2456467 | 46,070 bp | Integrase | Lambdoid phage: integrase with IS100 insertion; excisionase; Q; lysis and tail fiber genes; 31-bp direct repeat at boundary | |
| 2595153 | 2701942 | 106,790 bp | Integrase, IS100, IS285 | leuZ, tRNA-Asn | Composite island; yersiniabactin synthesis genes inserted near tRNA-Asn; integrase; tRNA duplication at boundary; phage remnant integrated at leuZ; two sets of transport genes; hms Fe uptake; fimbriae |
| 2952460 | 3008203 | 55,744 bp | serT | Many hypotheticals; fatty acid synthesis; cytotoxic necrotizing factor pseudogene (three pieces) | |
| 3389236 | 3400385 | 11,150 bp | ssrA | Cryptic prophage, somewhat P4-like; 85-bp direct repeat; integrase ≈800 bp from ssrA 5′ end (IS1541 in between); integrase; primase; repressor; replication genes | |
| ≈3574541 | ≈3601511 | ≈27 kbp | tRNA-Gly | Phage remnant: no flanking repeats; integrase ∼169 bp from tRNA-Gly 3′ end (glyU?); integrase; primase; regulatory gene | |
| 3691992 | 3876361 | 184,370 bp | pheV | TadA-F (biofilm formation); IS200; Fe transport; fimbriae and flagellar genes; IS1397; Rhs; adhesins; nonribosomal peptide synthase; IS100; enterotoxin; secretion proteins; aerobactin Fe uptake; quorum-sensing (HSL) genes; many hypotheticals | |
| 3923286 | 3980985 | 57,700 bp | ileX | TerXY; hemolysin; large hypothetical ORFs; transport genes; multidrug resistance | |
| 4061656 | 4088198 | 26,543 bp | Hypothetical ORFs |