TABLE 2.
Phage group | Genetic material | Subgroup | No. of:
|
Genome size range (kb) | |
---|---|---|---|---|---|
Genomes in subgroup | Signature genes | ||||
Leviphage | ssRNA | None | 10 | 2 | 3.5-4.3 |
Inophage | ssDNA | None | 13 | 0 | 5.8-8.8 |
Plectrophage | ssDNA | None | 2 | 6 | 6.8-8.3 |
Microphage | ssDNA | X174-like | 5 | 10 | 5.4-6.1 |
Chp1-like | 6 | 5 | 4.4-4.8 | ||
Podophage | dsDNA | PZA-like | 6 | 1 | 11.7-21.1 |
T7-like | 3 | 7 | 39.6-39.9 | ||
Siphophage | dsDNA | Lambda-like | 11 | 0 | 36.5-61.7 |
D29-like | 3 | 53 | 49.1-52.3 | ||
SK1-like | 4 | 15 | 22.2-31.8 | ||
TP901-like | 7 | 9 | 37.7-49.7 | ||
SFI21 like | 13 | 0 | 14.5-52.2b | ||
Myophage | dsDNA | P2-like | 6 | 2 | 30.6-35.6 |
Signature genes were described as loci found in all of the genomes within the proposed group and that had a BLASTP E value of <0.1 between all members. Details about the signature genes, links to alignments, sequences, and more information can be found at http://salmonella.utmem.edu/phage/tree/signature.html.
Leuconostoc oenos φL5 was not included in this analysis.