TABLE 2.
Probes and ORF of V. cholerae N16961 corresponding to each probe
| Probe | ORF | Description |
|---|---|---|
| L1 | VC0003 | Thiophene and furan oxidation protein ThdF |
| L2 | VC0012 | Chromosomal DNA replication initiator DnaA |
| L3 | VC0134 | Conserved hypothetical protein |
| L4 | VC0275 | Phosphoribosylamine-glycine ligase PurD |
| L5 | VC0533 | Lipoprotein NlpD |
| L6 | VC0543 | RecA protein |
| L6 | VC0717 | Putative protease |
| L8 | VC0852 | DNA repair protein RecN |
| L9 | VC0984 | Cholera toxin transcriptional activator ToxR |
| L10 | VC1008 | Sodium-type flagellar protein MotY |
| L11 | VC1091 | Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA |
| L12 | VC1174 | Anthranilate synthase component I TrpE |
| L13 | VC1220 | Phenylalanyl-tRNA synthetase, beta chain PheT |
| L14 | VC1354 | Conserved hypothetical protein |
| L15 | VC1486 | ABC transporter, ATP-binding protein |
| L16 | VC1540 | Multidrug resistance protein NorM, putative |
| L17 | VC1623 | Carboxynorspermidine decarboxylase NspC |
| L18 | VC1627 | Na+/H+ antiporter protein NhaA |
| L19 | VC1751 | Conserved hypothetical protein |
| L20 | VC1903 | Cell division protein FtsK, putative |
| L21 | VC2030 | RNase E Rne |
| L22 | VC2162 | Permease PerM, putative |
| L23 | VC2174 | UDP-sugar hydrolase UshA |
| L24 | VC2290 | NADH:ubiquinone oxidoreductase, Na translocating, beta subunit NqrF |
| L25 | VC2305 | Outer membrane protein OmpK |
| L26 | VC2431 | Topoisomerase IV, subunit B ParE |
| L27 | VC2560 | Sulfate adenylate transferase, subunit 2 CysD |
| S1 | VCA0011 | Regulatory protein MalT |
| S2 | VCA0103 | Sulfate permease family protein |
| S3 | VCA0204 | ATP-dependent RNA helicase RhlE |
| S4 | VCA0276 | Glycine cleavage system P protein GcvP, authentic frameshift |
| S5 | VCA0291 | Site-specific recombinase IntI4 |
| S6 | VCA0511 | Anaerobic ribonucleoside triphosphate reductase NrdD |
| S7 | VCA0606 | Phosphonoacetaldehyde phosphonohydrolase PhnX |
| S8 | VCA0657 | Aerobic glycerol-3-phosphate dehydrogenase GlpD |
| S9 | VCA0702 | Iron-containing alcohol dehydrogenase |
| S10 | VCA0759 | Arginine ABC transporter, periplasmic arginine-binding protein ArtI |
| S11 | VCA0805 | Exoribonuclease II Rnb |
| S12 | VCA0859 | Oxidoreductase, aldo/keto reductase 2 family |
| S13 | VCA0937 | Transcriptional regulator, AraC/XylS family |
| S14 | VCA0982 | Transcriptional regulator, LysR family |
| S15 | VCA1026 | Conserved hypothetical protein |