. 2002 Dec;184(23):6665–6680. doi: 10.1128/JB.184.23.6665-6680.2002

TABLE 2.

Annotation of all ORFs located within the gene island PAGI-2(C) in P. aeruginosa strain C

Gene identifi- cation	Coordinates		Direc- tion	Length (amino acids)	G+C (%)	GCI	Gene name	Homolog product	GenBank accession no.	E value (Blast search)
Gene identifi- cation	Left	Right	Direc- tion	Length (amino acids)	G+C (%)	GCI	Gene name	Homolog product	GenBank accession no.	E value (Blast search)
C1^a	229	2160	→	644	63.8	0.571	int	Phage-related integrase XF1718 (X. fastidiosa)	AAF84527	0E + 00
C2^a	2360	3016	←	219	59.1	0.341		Hypothetical protein XF1719 (X. fastidiosa)	AAF84528	1E − 71
C3^a	3136	3429	→	98	58.8	0.280		Hypothetical protein XF1720 (X. fastidiosa)	AAF84529	9E − 30
C4^a	3451	4341	←	297	61.6	0.427	bphR	BphR regulatory protein (R. eutropha)	CAB72138	9E − 83
C5	4379	4702	←	108	63.0	0.396		No significant similarity
C6	4734	6110	←	459	67.4	0.537		Pyridine nucleotide-disulfide oxidoreductase, class I, VC2638 (Vibrio cholerae)	AAF95779	1E − 73
C7	6153	6959	←	269	65.6	0.508		Conserved hypothetical protein str1262 (Synechocystis sp. strain PCC 6803)	BAA17856	5E − 25
C8	7050	7823	←	258	64.0	0.541	dsbG	Thiol:disulfide interchange protein DsbG (PA2476) (P. aeruginosa)	AAG05864	2E − 51
C9	7826	8662	←	279	63.2	0.437		Probable thiol:disulfide interchange protein (PA2477) (P. aeruginosa)	AAG05865	6E − 48
C10	8662	10515	←	618	64.9	0.464	dsbD	Probable thiol:disulfide interchange protein (PA2478) (P. aeruginosa)	AAG05866	1E − 135
C11	10598	11479	←	294	61.8	0.359	cycH	Cytochrome c-type biogenesis protein CycH (Sinorhizobium meliloti)	P45400	5E − 17
C12	11476	11931	←	152	57.5	0.392	cycL	Cytochrome c-type biogenesis protein CycL precursor (S. meliloti)	P45406	3E − 25
C13	11928	12452	←	175	60.4	0.473	ccmG	Cytochrome c biogenesis protein CcmG (PA1481) (P. aeruginosa)	AAG04870	3E − 37
C14	12449	14410	←	654	62.3	0.431	ccmF	Cytochrome c-type biogenesis protein CcmF (PA1480) (P. aeruginosa)	AAG04869	0E + 00
C15	14414	14860	←	149	60.6	0.427	cycJI ccmE	Cytochrome c-type biogenesis protein CycJ (P. fluorescens)	AAC44225	6E − 35
C15b	14844	15035	←	64	62.5	0.430	ccmD	Heme exporter protein D (cytochrome c-type biogenesis protein CcmD) (V. cholerae)	AAF95200	2E − 03
C16	15032	15769	←	246	62.3	0.519	ccmC	Heme exporter protein C (cytochrome c-type biogenesis protein CcmC) (V. cholerae)	AAF95201	9E − 67
C17	15782	16468	←	229	63.2	0.415	ccmB	Cytochrome c maturation protein B (Shewanella putrefaciens)	AAC02694	6E − 65
C18	16465	17076	←	204	59.6	0.354	ccmA	Heme exporter protein A (cytochrome c-type biogenesis ATP/binding protein CcmA) (V. cholerae)	AAF95203	7E − 39
C19	17257	17925	→	223	65.0	0.525	armR	Response regulator ArmR (two-component transcriptional regulator) (Pseudomonas sp. strain JR1)	AAF80268	4E − 59
C20	17922	19307	→	462	63.1	0.424	armS	Sensor kinase ArmS (two-component sensor protein) (Pseudomonas sp. strain JR1)	AAF80269	5E − 77
C21	19461	21059	←	532	64.5	0.459	cutE	Apolipoprotein N-acyltransferase (copper homeostasis protein CutE homolog) (P. aeruginosa)	AAC97167	3E − 67
C22	21084	23399	←	772	65.5	0.459		Putative metal transporter ATPase [Streptomyces coelicolor A3(2)]	CAB96031	9E − 87
C23	23323	24420	←	366	61.7	0.441		Hypothetical protein PA2481 (P. aeruginosa) (probable cytochrome c)	AAG05869	4E − 70
C24	24404	25222	←	273	64.3	0.476		ORF21 (Moritella marina) (probable cytochrome c₄)	BAA89395	4E − 23
C25	25219	25860	←	214	64.0	0.490	fixO/ccoO	ORF20 (M. marina) (cytochrome c oxidase, monoheme subunit, membrane-bound)	BAA89394	3E − 17
C26	25857	27413	←	519	60.4	0.498	fixN/ccoN	ORF20 (M. marina) (cytochrome c oxidase, heme b- and copper-binding subunit, membrane bound)	BAA89393	6E − 68
C27	27932	29602	←	557	67.6	0.651		Conserved hypothetical protein PA2345 (P. aeruginosa)	AAG05733	1E − 125
C28	29651	30610	←	320	64.8	0.564		Hypothetical protein PA2915 (P. aeruginosa)	AAG06303	2E − 99
C29	30717	31244	←	176	68.2	0.544		Hypothetical protein (E. coli)	AAC75715	1E − 47
C30	31267	31578	←	104	61.9	0.611		Transcriptional activator HlyU (V. cholerae)	AAF93843	6E − 16
C31	31728	32954	→	409	70.2	0.646		Similar to metabolite transport protein (Bacillus subtilis)	CAB12326	2E − 34
C32	33031	33408	→	126	65.9	0.535		Hypothetical protein Rv1767 (Mycobacterium tuberculosis)	CAB09310	3E − 22
C33	33519	33890	→	124	58.1	0.491		No significant similarity
C34	33950	34744	←	265	64.9	0.619	fenO	Hydroxybutyryl dehydratase (B. subtilis) (probable enoyl coenzyme A hydratase/isomerase)	AAF32340	2E − 24/PICK>
C35	35156	36151	→	332	63.6	0.476		Probable transcriptional regulator (PA1182) (P. aeruginosa)	AAG04571	2E − 42
C36^a	36199	38091	←	631	65.0	0.489		Hypothetical protein XF1753 (X. fastidiosa)	AAF84562	0E − 00
C37^a	38407	39033	→	209	65.6	0.603		Conserved hypothetical protein XF1754 (X. fastidiosa)	AAF84563	1E − 105
C38^a	39046	39678	→	211	64.0	0.588		Conserved hypothetical protein XF1755 (X. fastidiosa)	AAF84564	1E − 112
C39^a	39752	40111	→	120	65.6	0.466		Hypothetical protein XF1756 (X. fastidiosa)	AAF84565	1E − 15
C40^a	40127	41674	←	516	62.2	0.536		No significant similarity
C41^a	41690	42046	←	119	70.0	0.611		No significant similarity
C42^a	42043	43437	←	465	67.5	0.611		No significant similarity
C43^a	43447	44397	←	317	66.7	0.689		No significant similarity
C44^a	44394	44840	←	149	68.0	0.512		No significant similarity
C45^a	45005	45499	←	165	63.0	0.516	radC	DNA repair protein (XF0148) (X. fastidiosa)	AAF82961	9E − 34
C46^a	45675	46439	←	255	67.5	0.508		Hypothetical protein PA0982 (P. aeruginosa)	AAG04371	4E − 28
C47^a	46464	49295	←	944	66.6	0.606		Low homology at the N terminus to sex pilus assembly and synthesis protein (Sphingomonas aromaticivorans); origin of replication binding domain	AAD03958	1E − 07
C48^a	49356	49796	←	147	68.9	0.704		No significant similarity
C49^a	49777	51195	←	473	68.7	0.672		No significant similarity
C50^a	51185	52096	←	304	71.5	0.631		No significant similarity
C51^a	52093	52785	←	231	68.1	0.659		No significant similarity
C52^a	52782	53180	←	133	69.9	0.618		No significant similarity
C53^a	53193	53552	←	120	66.7	0.733		No significant similarity
C54^a	53569	53802	←	78	64.5	0.628		No significant similarity
C55^a	53799	54182	←	128	72.4	0.599		No significant similarity
C56	54386	54856	→	157	59.7	0.442		Putative excisionase ORF277 (S. aromaticivorans plasmid pNL1)	AAD03880	2E − 16
C57	54853	55428	→	192	61.1	0.467		Hypothetical protein ORF271 (S. aromaticivorans plasmid pNL1)	AAD03879	2E − 23
C58	55446	56360	→	305	59.1	0.405		CG11743 gene product (Drosophila melanogaster)	AAF54250	7E − 26
C59	56357	56827	→	157	61.4	0.407		No significant similarity
C60	56824	57324	→	167	56.7	0.449		No significant similarity
C61	57324	58226	→	301	58.7	0.536		No significant similarity
C62	58031	58990	→	320	60.4	0.430		No significant similarity
C63	59000	61624	→	875	66.7	0.534		No significant similarity
C64^a	61665	62414	←	250	66.0	0.649		No significant similarity
C65^a	62411	64600	←	730	65.6	0.612		Hypothetical protein (Salmonella enterica serovar Typhi)	AAF69957	7E − 30
C66^a	64605	65153	←	183	72.9	0.583		No significant similarity
C67^a	65150	65740	←	197	73.1	0.622		Hypothetical protein RP457 (Rickettsia prowazekii)	CAA14913	4E − 12
C68^a	65722	66459	←	246	70.6	0.684		No significant similarity
C69^a	66472	67116	←	215	71.0	0.616		No significant similarity
C70^a	67113	67712	←	200	68.8	0.514		PilL (type IV pili) (Salmonella serovar Typhi)	AAF14812	3E − 19
C71^a	67851	70130	←	760	64.9	0.615		Hypothetical protein pXO1-08 (Bacillus anthracis virulence plasmid pXO1) (with helicase domain)	AAD32312	9E − 43
C72^a	70267	70572	←	102	64.1	0.576		No significant similarity
C73^a	70662	70982	←	107	61.7	0.556		No significant similarity
C74^a	71033	72142	←	370	66.2	0.597		Hypothetical protein pXO1-10 (B. anthracis virulence plasmid pXO1)	AAD32314	5E − 11
C75^a	72207	72854	←	216	67.3	0.646		No significant similarity
C76^a	72931	73191	←	87	60.5	0.573		Hypothetical protein XF1757 (X. fastidiosa)	AAF84566	1E − 39
C77^a	73208	73615	←	136	65.7	0.577		Hypothetical protein XF1758 (X. fastidiosa)	AAF84567	6E − 68
C78^a	73720	74061	←	114	61.7	0.460		Conserved plasmid protein XF1759 (X. fastidiosa)	AAF84568	3E − 50
C79^a	74156	74845	←	230	67.2	0.566		Hypothetical protein XF1760 (X. fastidiosa)	AAF84569	1E − 106
C80^a	74940	75767	←	276	63.4	0.567		Hypothetical protein ORF273 (oriT 5′ region) (E. coli plasmid F)	AAA99218	2E − 88
C81^a	75913	76911	←	333	64.9	0.570		Hypothetical protein XF1761 (X. fastidiosa)	AAF84570	1E − 156
C82^a	77129	77413	←	95	75.1	0.638		Conserved hypothetical protein XF1762 (X. fastidiosa)	AAF84571	2E − 41
C83^a	77721	77981	←	87	69.0	0.570		Hypothetical protein XF1764 (X. fastidiosa)	AAF84573	7E − 36
C84	78051	78692	←	214	65.3	0.652	tnp*	Transposase (P. fluorescens)	CAA70408	2E − 90
C84b	78533	79048	←	172	66.3	0.458	tnp*	TnpA transposase (Tn21) (E. coli)	AAC33926	6E − 51
C85	79067	80755	←	563	69.0	0.620	merA	Mercuric [Hg(II)] reductase (Thiobacillus sp.)	CAA72398	0E + 00
C86	80766	81053	←	96	66.0	0.671	merP	Periplasmic mercuric ion binding protein (Sphingomonas paucimobilis)	AAD23805	5E − 32
C87	81066	81416	→	117	67.2	0.626	merT	MerT protein (mercuric transport protein) (E. coli plasmid pDU1358)	AAA98222	2E − 55
C88	81488	81895	→	136	63.5	0.517	merR	Organomercurial resistance regulatory protein (P. stutzen)	AAC38229	9E − 52
C89^a	82157	82981	←	275	64.7	0.611		No significant similarity
C90^a	83270	83548	←	93	60.2	0.655		No significant similarity
C91^a	83646	84383	←	246	64.8	0.585		No significant similarity
C92^a	84467	85204	←	246	63.7	0.594		No significant similarity
C93^a	85336	85728	←	131	62.1	0.629		Hypothetical protein XF1771 (X. fastidiosa)	AAF84580	2E − 66
C94^a	85750	86163	←	138	63.5	0.442		Hypothetical protein XF1772 (X. fastidiosa)	AAF84581	2E − 35
C95^a	86300	86611	←	104	62.2	0.423		Hypothetical protein XF1773 (X. fastidiosa)	AAF84582	1E − 17
C96	86948	87448	←	167	61.5	0.444	lspA	Lipoprotein signal peptidase LspA (Serratia marcescens)	AAC82524	1E − 32
C97	87452	90364	←	971	65.7	0.584		Probable metal-transporting P-type ATPase (PA3690) (P. aeruginosa)	AAG07078	0E +00
C98	90456	90854	→	133	60.2	0.476		Probable transcriptional regulator (PA3689) (P. aeruginosa)	AAG07077	5E − 37
C99	91309	91545	←	79	61.2	0.496		No significant similarity
C100	91930	92565	→	212	61.5	0.417		Putative integral membrane protein/transporter (Neisseria meningitidis)	AAF42077	8E − 26
C101^a	93289	95319	←	677	66.4	0.580	topB	DNA topoisomerase III (XF1776) (X. fastidiosa)	AAF84584	0E + 00
C102^a	95603	96043	←	147	65.5	0.644	ssb	Single-stranded-DNA binding protein (XF1778) (X. fastidiosa)	AAF84586	1E − 71
C103^a	96117	96644	←	176	64.2	0.533		Hypothetical protein XF1779 (X. fastidiosa)	AAF84587	9E − 78
C104^a	96641	97432	←	264	66.4	0.601		Hypothetical protein XF1780 (X. fastidiosa)	AAF84588	1E − 123
C105^a	97862	99100	←	413	67.7	0.513		Hypothetical protein XF1781 (X. fastidiosa)	AAF84589	0E + 00
C106^a	99104	99664	←	187	65.6	0.661		Conserved hypothetical protein (XF1782) (X. fastidiosa)	AAF84590	1E − 96
C107^a	99679	101358	←	560	69.9	0.590		Protein fused from two hypothetical proteins (XF1783 and XF1784) (X. fastidiosa)	AAF84591, AAF84592	1E − 111, 1E − 117
C108^a	101604	102479	←	292	68.7	0.551	soj	Chromosome partitioning-related protein (XF1785) (X. fastidiosa)	AAF84593	1E − 150
C109^a	102522	102743	←	74	64.0	0.703		Phage-related protein (XF1786) (X. fastidiosa)	AAF84594	9E − 35
C110^a	102853	103599	←	249	57.6	0.402		Hypothetical protein XF1787 (X. fastidiosa)	AAF84595	1E − 101
C111^a	104050	104550	→	167	55.7	0.399		No significant similarity

ORF defined as noncargo in the text (including the homologs).