TABLE 1.
Strain, plasmid, or primer | Description or sequence | Source or reference |
---|---|---|
Strains | ||
MC1061 | F−araD139 Δ(ara leu)7696 Δ(lacY74) galU galK hsdr hsdM+strA | BioRad |
CL100 | ΔiscS | 17 |
CL100(DE3) | DE3 lysogen of CL100 | 17 |
CL201 | ΔcsdB | This work |
CL102 | Δcsd ΔcsdB | This work |
CL103 | ΔthiI | This work |
CL250 | ΔmnmA | —b |
CL260 | ΔmiaB | This work |
PK4331 | MG1655 lacZΔ145 ΔiscS::Knr | 30 |
PK5930 | MG1655 lacZΔ145 ΔiscS::Knr ΔcsdA::Cmr | —c |
Plasmids | ||
pCL010 | Wild-type E. coli iscS in pET21c | 14 |
pCSD | Wild-type E. coli csd in pET21c | This work |
pCSDB | Wild-type E. coli csdB in pET21c | This work |
pKO3 | For deletion of genes in E. coli | 20 |
Primers | ||
CSD.N | 5′-ATC AAG CCG AGG AGT CAT ATG AAC GTT TTT AAT CCC GCG | |
CSD.C | 5′-CGA ATT GCG GGT GAA TTC TTA ATC CAC CAA TAA TTC CAG | |
CsdB.N | 5′-GCT GCC AGG AGG TGC CAT ATG ATT TTT TCC GTC GAC AAA | |
CsdB.C | 5′-AGC CAT AGT GCC GGA TCC TTA TCC CAG CAA ACG GTG AAT | |
CSD.No | 5′-AAG GAA AAA AGC GGC CGC TAC ATT TAC CCT GTC TGT CCA TAG TGAT T | |
CSD.Ni | 5′-CAC GCA ATA ACC TTC ACA CTC CAA ATT TAT AAC CAT GGT ACT CCT CGG CTT G | |
CSD.Co | 5′-CGC ACG CAT GTC GAC GTC TTA TCC GAC CCG GTT CT | |
CSD.Ci | 5′-GTT ATA AAT TTG GAG TGT GAA GGT TAT TGC GTG TGA CCG CGC GCT GGA ATT A | |
CsdB.No | 5′-AAG GAA AAA AGC GGC CGC ACG CAA CTC AAT GGC GAA AAC A | |
CsdB.Ni | 5′-CAC GCA ATA ACC TTC ACA CTC CAA ATT TAT AAC AAT CAT CTT GCA CCT CCT GGC | |
CsdB.Co | 5′-CGC ACG CAT GTC GAC CAT TGA CCA TCC GGC AAT GTG A | |
CsdB.Ci | 5′-GTT ATA AAT TTG GAG TGT GAA GGT TAT TGC GTG CAC CGT TTG CTG GGA TAA CAG |
For primers, restriction sites are underlined, and the 33-bp gene replacement tag sequence is shown in bold (see text). Primers labeled No, Co, etc., were used to perform in-frame deletion by the method of Link et al. (20).
R. Kambampati and C. T. Lauhon, submitted.
P. J. Kiley, unpublished data.