TABLE 1.
Complete genome characteristics of Prevotella bivia GTC 18476 isolated from a clinical specimen in Japan
| Parameter | Strain name |
|---|---|
| Prevotella bivia GTC 18476 | |
| DNBSEQ sequencinga | |
| No. of reads | 4,368,978 |
| Size (kb) | 655,346.7 |
| Avg coverage (×) | 259.0 |
| DRA accession no. | DRR628306 |
| ONT sequencinga | |
| No. of reads | 73,153 |
| Size (kb) | 860,426 |
| Avg read length (bp) | 11,762 |
| Avg coverage (×) | 340.5 |
| N50 | 17,227.0 |
| DRA accession no. | DRR628307 |
| Assembly | |
| Assembly N50 (bp)b | 1,298,955 |
| Estimated genome completeness (%)c | 100.0 |
| Estimated genome contamination (%)c | 0.0 |
| Genome structure | Two chromosomes, one plasmid |
| DDBJ/GenBank accession no. | Chromosome 1 (AP038911) |
| Chromosome 2 (AP038912) | |
| Plasmid (AP038913) | |
| Genome size (bp) | 1,298,955 (chromosome 1) |
| 1,212,313 (chromosome 2) | |
| 19,020 (Plasmid) | |
| GC content (%) (chromosome/plasmid name) |
39.4 (chromosome 1) |
| 39.4 (chromosome 2) | |
| 33.2 (Plasmid) | |
| No. of coding sequencesd | 2,088 |
| No. of rRNAsd | 12 |
| No. of tRNAsd | 50 |
| No. of CRISPRsd | 0 |
a
DRA, DDBJ Sequence Read Archive.
b
Determined with seqkit v2.9.0.
c
Determined with CheckM v1.2.2.
d
DFAST, DDBJ Fast Annotation and Submission Tool.