Table 1.
Crystallographic data collection, phasing and refinement
Se–Met derivative |
|||
---|---|---|---|
‘Native' | Peak | Edge | |
A. Data collection and phasing statistics | |||
Wavelength (Å) | 0.928 | 0.97931 | 0.97941 |
Total no. of reflections | 807 714 | 709 329 | 719 313 |
Resolution range (Å) | 50–2.4 | 50–3.05 | |
No. of unique reflections | 34 814 (3445) | 18 452 (1714) | 17 729 (1653) |
Rsym (last shell) | 0.087 (0.33) | 0.112 (0.455) | 0.11 (0.446) |
Completeness (%) (last shell) | 98.7 (99.9) | 99.7 (97.7) | 99.6 (98.0) |
I/σ(I) | 34.0 (7.8) | 18.0 (3.5) | 19.9 (3.8) |
No. of Se sites | N/A | 8 | 8 |
Phasing power (anomalous acentrics) | N/A | 1.567 | — |
Mean overall figure of merit | |||
Centric | N/A | 0.7562 | |
Acentric | N/A | 0.6127 | — |
B. Refinement statistics | |||
Resolution range (Å) | 50–2.4 | 50–3.05 | |
No. of reflections used in refinement | 33 075 | 31 321 | |
Rcryst/Rfree | 0.22/0.27 | 0.24/0.29 | |
No. of atoms | |||
Protein | 4235 | 4297 | |
DNA | 608 | 673 | |
Water | 186 | 113 | |
Average B factors (Å2) | 28.3 | 37.6 | |
R.m.s.d. | |||
Bonds (Å) | 0.0065 | 0.0071 | |
Angles (deg) | 1.37 | 1.33 | |
aRsym=∑∣In−〈In〉/∑In over all h, where In is the intensity of the reflection h. | |||
bRcryst/Rfree=∑∣∣Fo∣−∣Fc∣∣/∑∣Fo∣. Rfree was calculated with 5% of data excluded from refinement. |