Figure 4.

Coding Sequence Differences between Rc Alleles.

(A) Graphic representation of coding sequence differences in LOC_Os07g11020.1 between several pairs of genotypes. The mRNA is represented by rectangles, and the beginning and end of the exons are indicated by vertical lines. Sequence changes are annotated as follows: closed circles, nonsynonymous substitution; lines, synonymous substitution; closed triangles, in-frame indel; open triangles, frame-shift indel; point-up triangles, deletion from O. rufipogon or H75; point-down triangle, insertion into O. rufipogon.

(B) Table showing polymorphic sites within the coding region of LOC_Os07g11020.1 for several different alleles of Rc. Functional nucleotide polymorphisms are highlighted in gray.