TABLE 1.
Serotypes, STs, allelic profiles, PFGE types and PspA families of 156 Polish CSF pneumococcal isolates
| Serotype | STa,b | Allelic profilea,c | Comment | No. of isolates | PFGE typesd | PspAe |
|---|---|---|---|---|---|---|
| 1 | *306 | 12-8-13-5-16-4-20 | 3 | 47a, b | 1 | |
| 1031 | 16-31-4-34-6-4-94 | 1 | 98 | 1 | ||
| 2 | 1504 | 2-13-4-1-6-147-14 | 2 | 57, 58 | 2 | |
| 3 | *180 | 7-15-2-10-6-1-22 | 11 | 1 | 2 | |
| 505 | 46-8-2-10-6-1-22 | DLV of ST180 | 3 | 2 | 1 | |
| 378 | 13-9-15-14-10-16-19 | 1 | 84 | 2 | ||
| 1024 | 10-5-28-11-17-111-17 | 1 | 77 | 2 | ||
| 4 | *205 | 10-5-4-5-13-10-18 | 3 | 41 a, b | 2/NT | |
| *247 | 16-13-4-5-6-10-14 | 4 | 39, 42 a, b | 2 | ||
| *695 | 16-13-4-4-6-113-18 | 1 | 41b | 2 | ||
| 1022 | 8-8-4-1-15-1-20 | 1 | 80 | 2 | ||
| 5 | *289 | 16-12-9-1-41-33-33 | Columbia5-19 | 1 | 63 | 1 |
| 6A | 208 | 10-13-2-1-6-19-14 | 1 | 28 | 2 | |
| 490 | 2-13-9-1-6-19-14 | 5 | 16, 17, 18, 79, 81 | 2 | ||
| 1014 | 2-10-1-43-6-31-6 | 2 | 26, 99 | 2 | ||
| 6B | *90 | 5-6-1-2-6-3-4 | Spain6B-2 | 2 | 76 a, b | NT |
| 135 | 7-5-4-12-6-20-46 | 1 | 100 | 2 | ||
| *176 | 7-13-8-6-10-6-14 | 3 | 13, 14, 73 | 1 | ||
| *315 | 20-28-1-1-15-14-14 | Poland6B-20 | 1 | 12 | 2 | |
| 606 | 16-28-1-1-15-14-14 | Poland6B-20 (SLV of ST315) | 1 | 12 | 2 | |
| 497 | 7-25-4-2-48-20-28 | 1 | 15 | 1 | ||
| 948 | 1-8-9-1-10-3-6 | 1 | 89 | 2 | ||
| 1013 | 2-8-9-1-6-19-14 | 1 | 11 | 2 | ||
| 7F | *191 | 8-9-2-1-6-1-17 | 2 | 7, 8 | 2 | |
| 1023 | 8-9-2-5-6-1-17 | 1 | 6 | 2 | ||
| 1484 | 66-9-2-5-6-1-17 | 1 | 6 | 2 | ||
| 8 | *53 | 2-5-1-11-16-3-14 | 5 | 24, 27, 71 | 1 | |
| 404 | 7-9-15-11-42-1-70 | 1 | 85 | 2 | ||
| 1480 | 7-9-15-11-93-1-70 | 2 | 23a, b | 2 | ||
| 9N | 66 | 2-8-2-4-6-1-1 | 1 | 40 | 2 | |
| 1008 | 1-5-4-32-25-1-8 | 1 | 70 | 1 | ||
| 9V | *156 | 7-11-10-1-6-8-1 | Spain9V-3 | 2 | 38b, c | 2 |
| 557 | 7-11-10-1-6-58-1 | Spain9V-3 (SLV of ST156) | 1 | 38a | 2 | |
| 239 | 15-17-4-16-6-19-17 | 3 | 37 | 1 | ||
| 10A | 97 | 5-7-4-2-10-1-27 | 1 | 56 | 1 | |
| 598 | 2-12-2-16-27-28-14 | 1 | 55a | NT | ||
| 10B | 598 | 2-12-2-16-27-28-14 | 1 | 55b | 2 | |
| 11A | 1012 | 2-5-29-18-42-3-18 | 1 | 65 | 2 | |
| 11B | 1009 | 1-5-6-1-17-16-11 | 1 | 66 | 2 | |
| 12F | *218 | 10-20-14-1-6-1-29 | 1 | 72 | NT | |
| 14 | *9 | 1-5-4-5-5-1-8 | England14-9 | 1 | 93 | 1 |
| *124 | 7-5-1-8-14-11-14 | 3 | 29, 31 | 2 | ||
| 143 | 7-5-10-18-6-8-1 | 2 | 30c | 2 | ||
| *156 | 7-11-10-1-6-8-1 | Spain9V-3-14 | 2 | 30b, 38d | 2 | |
| 790 | 7-5-10-18-6-58-1 | 1 | 30a | 2 | ||
| 15B/C | *199 | 8-13-14-4-17-4-14 | 2 | 49 | 2 | |
| 1025 | 10-13-2-8-17-16-8 | 2 | 48a, b | 2 | ||
| 1502 | 7-2-1-8-102-1-163 | 1 | 59 | 1 | ||
| 16F | 1004 | 1-2-15-5-17-16-1 | 1 | 67 | 2 | |
| 17F | 123 | 7-2-40-1-10-1-45 | 1 | 60 | 2 | |
| 392 | 7-5-1-1-6-31-14 | 1 | 61 | 2 | ||
| 18C | *102 | 5-13-11-4-15-12-19 | 1 | 92 | 2 | |
| 1016 | 5-13-11-4-15-1-19 | SLV of ST102 | 5 | 52, 53, 54a, b | 2 | |
| 496 | 42-35-29-36-9-39-18 | 1 | 102 | 1 | ||
| 1472 | 1-96-9-1-9-14-6 | 1 | 101 | 2 | ||
| 19A | 1007 | 1-5-4-5-15-1-18 | 1 | 36 | 1 | |
| 19F | 79 | 2-27-2-4-9-4-31 | 1 | 35 | 2 | |
| *423 | 1-5-4-12-5-3-8 | 10 | 34a, b | 1 | ||
| 1006 | 1-5-1-12-5-3-8 | 1 | 34c | 2 | ||
| 1029 | 13-16-19-5-6-20-26 | 1 | 33 | 2 | ||
| 1471 | 1-5-4-12-5-26-159 | 1 | 32 | 1 | ||
| 20 | 235 | 15-8-8-18-15-1-31 | 2 | 43, 45 | 1 | |
| 1026 | 10-16-32-1-15-28-31 | 2 | 44 | 1 | ||
| 1030 | 15-8-8-18-15-1-9 | 1 | 46 | 1 | ||
| 1483 | 65-8-8-18-15-1-31 | 1 | 94 | 1 | ||
| 22A | 1485 | 67-2-40-11-10-1-45 | 1 | 22 | 2 | |
| 433 | 1-1-4-1-18-58-17 | 1 | 20 | NT | ||
| 1018 | 7-2-40-1-17-1-45 | 2 | 19, 25 | 2 | ||
| 22F | 1470 | 1-2-19-66-15-1-11 | 1 | 21 | 2 | |
| 23A | 42 | 1-8-9-9-6-4-6 | 1 | 78 | 2 | |
| 1011 | 1-8-9-2-6-4-72 | 1 | 74 | 1 | ||
| 23F | *81 | 4-4-2-4-4-1-1 | Spain23F-1 | 2 | 3 | 2 |
| 173 | 7-13-8-1-10-6-36 | Poland23F-16 | 1 | 4 | 1 | |
| 272 | 7-13-8-1-10-6-37 | Poland23F-16 (SLV of ST173) | 2 | 82a, b | 1 | |
| 311 | 1-8-9-1-6-4-6 | 1 | 90 | 1 | ||
| 440 | 7-5-1-1-13-31-14 | 2 | 5a, 9 | 2 | ||
| 24F | 72 | 2-13-2-4-9-4-1 | 1 | 10 | 2 | |
| 230 | 12-19-2-17-6-22-14 | 1 | 88 | 1 | ||
| 27 | 1475 | 2-17-107-24-9-105-14 | 1 | 69 | NT | |
| 28F | 546 | 16-44-1-16-9-11-17 | 1 | 97 | 1 | |
| 1503 | 2-44-1-16-106-11-17 | 1 | 97 | 1 | ||
| 31 | 1005 | 1-2-29-1-46-14-8 | 1 | 64 | 1 | |
| 33F | 100 | 5-12-29-12-9-39-18 | 1 | 62 | 1 | |
| 34 | 1015 | 2-25-2-16-6-28-14 | 1 | 81 | 2 | |
| 1481 | 7-12-53-1-101-1-8 | 1 | 50 | 2 | ||
| 1501 | 7-8-1-70-101-146-8 | 2 | 51 | 2 | ||
| 35F | 1028 | 13-8-1-8-6-1-14 | 1 | 83 | 2 | |
| 37 | 447 | 29-33-19-1-36-22-31 | 1 | 96 | 1 | |
| 1033 | 29-33-19-1-13-22-31 | 1 | 87 | 1 | ||
| 38 | 393 | 10-43-41-18-13-49-6 | 1 | 103 | 1 | |
| 39 | 1478 | 7-5-92-16-103-1-31 | 1 | 68 | 1 | |
| Rough | 66 | 2-8-2-4-6-1-1 | 1 | 86 | 2 | |
| 440 | 7-5-1-1-13-31-14 | 1 | 5b | 1 |
a
New STs and alleles in bold.
b
The representatives of major invasive clones (26, 30) are marked by an asterisk; STs associated with increased virulence (5, 16, 26) are underlined.
c
In the order aroE-gdh-gki-recP-spi-xpt-ddl.
d
The numbering of PFGE types according to Skoczynska and Hryniewicz (28).
e
NT, not typeable.