Table 1. Compilation of the potential sites identified by the computer method.
Cleavage position | HBV P1 stem | ORF targeteda | ΔG (kcal/mol) | RNase H assayc | Rz assayc |
---|---|---|---|---|---|
409 | GCCCCUA | C and P genes | –6.6 | n.s. | n.d. |
523 | AGAUCUC | P gene | –8.0 | ++ | – |
524 | GAUCUCA | P gene | –8.0 | + | – |
946 | GCAUGGG | PreS1 gene | –8.5 | + | – |
1147 | GCCCUCA | PreS1 gene | –9.7 | – | n.d. |
1154 | GGCUCAG | PreS1 gene | –8.5 | +++ | + |
1543 | GGACUUC | S genes | –7.1 | +++ | ++ |
2250 | GGCCUAU | P gene | –8.3 | + | – |
2808 | GCACCUC | X gene | –8.1 | n.s. | n.d. |
212b | GGGUGGG | C genes | –0.3 | +++ | + |
486b | GCCUCGC | P gene | –0.9 | +++ | – |
513b | GCGUCGC | P gene | –3.0 | +++ | +++ |
n.d., not determined; n.s., not specific.
aSee Figure 1B.
bThese sites were suggested not accessible.
cRelative level of cleavage.