TABLE 2.
Details of alignments used for parsimony analyses
| ORFa | Typeb | Lengthc (no.) | No. of informative charactersd |
|---|---|---|---|
| 1a | nt | 3,045 | 860 |
| 2a | nt | 2,672 | 863 |
| 2b | nt | 372 | 154 |
| 2b | aa | 137 | 63 |
| 3a | nt | 866 | 197 |
| CP | nt | 788 | 212 |
| 3′ NTR | nt | 284 | 143 |
a
ORF used for analysis.
b
Type of sequence used: nt, nucleotide; aa, amino acid.
c
The length includes gaps in the alignment, which were considered as fifth-character states
d
The number of informative characters, e.g., for the 1a ORF, 860 of the 3,045 nucleotide positions in the alignment were parsimony informative.