HERV-K	Human endogenous retrovirus K
HiFi	Highly accurate circular consensus reads
IL	Illumina
L1	Long interspersed nuclear element-1
ONT	Oxford Nanopore Technologies
ORF	Open reading frame
PB	Pacific Biosciences
RNP	Ribonucleoprotein
SMRT	Single-molecule real-time
SV	Structural variants
SVA	SINE-VNTR-Alu
TAD	Topologically associating domain
TGS	Third-generation sequencing
TE	Transposable element
TPRT	Target-primed reverse transcription
TSD	Target site duplication
UMI	Unique molecular identifiers
UTR	Untranslated region
VNTR	Variable number tandem repeat
WGS	Whole-genome sequencing