Table 3. Orientation factors (κ2/r6 values in nm−6) of the tryptophans to the haem and to MAMC, and of MAMC to the haem, in the CYP2D6 homology model obtained from MD simulations.
κ2/r6 (nm−6) | ||||||
---|---|---|---|---|---|---|
Haem* | Haem* | |||||
(MAMC present) | (no MAMC present) | MAMC | ||||
Average | R.M.S.D. | Average | R.M.S.D. | Average | R.M.S.D. | |
W75 | 0.007 | 0.004 | 0.022 | 0.011 | 0.005 | 0.005 |
W128 | 0.330 | 0.192 | 0.362 | 0.145 | 0.079 | 0.048 |
W152 | 0.048 | 0.025 | 0.036 | 0.016 | 0.002 | 0.002 |
W262 | 0.002 | 0.002 | 0.003 | 0.003 | 0.001 | 0.000 |
W316 | 0.069 | 0.022 | 0.083 | 0.019 | 0.009 | 0.006 |
W409 | 0.017 | 0.013 | 0.029 | 0.011 | 0.003 | 0.003 |
MAMC | 7.289 | 6.365 |