WGS	Whole-Genome Sequencing
AMR	Antimicrobial Resistance
MALDI-TOF MS	Matrix-Assisted Laser Desorption Ionisation Time-Of-Flight Mass Spectrometry
NCBI	National Centre for Biotechnology Information
SRA	Sequence Reads Archive
ESBL	Extended-Spectrum $\beta$-lactamase
WHO	World Health Organisation
CGE	Centre for Genomic Epidemiology
SNP	Single-Nucleotide Polymorphism
HPC	High-Performance Computing
iTOL	Interactive Tree Of Life
ST	Sequence Type
DZ	Algeria
EGY	Egypt
ET	Ethiopia
NE	Niger
ML	Mali
NG	Nigeria
KE	Kenya
TZ	Tanzania
TN	Tunisia
GH	Ghana
ZA	South Africa
ZM	Zambia