AMR	Antimicrobial Resistance
BLASTp	Basic Local Alignment Search Tool for Proteins
CAI	Codon Adaptation Index
CTL	Cytotoxic T Lymphocyte
DEG	Database of Essential Genes
HLA	Human Leukocyte Antigen
HTL	Helper T Lymphocyte
IEDB	Immune Epitope Database
IFN-γ	Interferon-Gamma
IgG	Immunoglobulin G
IL-2	Interleukin-2
MD	Molecular Dynamics
MDR	Multidrug Resistance
MEV	Multi-Epitope Vaccine
MHC	Major Histocompatibility Complex
NMA	Normal Mode Analysis
RND	Resistance-Nodulation-Division
RMSD	Root Mean Square Deviation
RMSF	Root Mean Square Fluctuation
TLR1/TLR2	Toll-Like Receptor 1/2